Rroxscaffold_2G00144500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006968
Physical Location & Seq
Reverse (-)
82390531 .. 82395993
5463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144500.1

Sequence Viewer

Length: 387 bp
ATGAAGTTAGAGATGTGCTCGGAGATACGGCGACTAGCCGACAATGGCTCGGGAGTTGTGGGTTTTGAGAGCGACAACGATGTGTTTAGAGTTCTGGGTTTTATTCGGAAGGGAGAGGTTGATGAAACTCTTCGTGTAGAAAACCTAGATCGGGGAGAGAATAACCATAATTGGGAAAGGGAAAGAATGTCTCTCGATCGGGTGAGAAGAACCAAAATGGGAGCTGTAGTTGCTCGTGGTCTAGCTCGGGGAGAGAGAAAGAAGACGGGGGCAATTAGCCTTGCTTTTGGTGCGGATGCTGGTGGTAAGGACCACGACGGATTGGTCGTTGATAGTAGCAGCGCTAGTAGCGATGGCGAAGGAGGTGGAAGTGATGGTGGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.74

Weight (kDa)

5.27

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AciI CCGC 1 cut(s) 293
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 151, 172
AluBI AGCT 2 cut(s) 224, 245
AluI AGCT 2 cut(s) 224, 245
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 195
Ama87I CYCGRG 2 cut(s) 49, 246
Aor51HI AGCGCT 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 2 cut(s) 49, 246
AvaII GGWCC 1 cut(s) 310
BauI CACGAG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 351
BccI CCATC 2 cut(s) 347, 368
BceAI ACGGC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 5 cut(s) 35, 146, 242, 345, 385
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 345
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 2 cut(s) 49, 246
BmgT120I GGNCC 1 cut(s) 310
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 172
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 151, 172
BseXI GCAGC 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 2 cut(s) 49, 246
BslI CCNNNNNNNGG 2 cut(s) 151, 172
BsmAI GTCTC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 49, 246
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 148, 196
BspACI CCGC 1 cut(s) 293
BssMI GATC 2 cut(s) 148, 196
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 301
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 151, 199
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 148, 196
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 230, 290, 348
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 301
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 310
CviJI RGCY 5 cut(s) 38, 48, 224, 245, 279
CviKI_1 RGCY 5 cut(s) 38, 48, 224, 245, 279
DpnI GATC 2 cut(s) 150, 198
DpnII GATC 2 cut(s) 148, 196
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 310
Eco47III AGCGCT 1 cut(s) 343
Eco88I CYCGRG 2 cut(s) 49, 246
FaiI YATR 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 5 cut(s) 35, 146, 242, 345, 385
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 340
HaeII RGCGCY 1 cut(s) 345
HhaI GCGC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 22, 108
Hpy188III TCNNGA 2 cut(s) 51, 194
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 103, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 290, 348
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 148, 196
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 80, 285
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 286
MaeI CTAG 5 cut(s) 35, 146, 242, 345, 385
MalI GATC 2 cut(s) 150, 198
MboI GATC 2 cut(s) 148, 196
MboII GAAGA 3 cut(s) 122, 219, 274
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 169, 273
MnlI CCTC 2 cut(s) 109, 356
MroXI GAANNNNTTC 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 230, 290, 348
NdeII GATC 2 cut(s) 148, 196
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 341
Ple19I CGATCG 1 cut(s) 199
PspPI GGNCC 1 cut(s) 310
PvuI CGATCG 1 cut(s) 199
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 148, 196
Sau96I GGNCC 1 cut(s) 310
SduI GDGCHC 1 cut(s) 20
SetI ASST 5 cut(s) 120, 147, 226, 247, 367
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 310
Sse9I AATT 2 cut(s) 169, 273
SsiI CCGC 1 cut(s) 293
SspMI CTAG 5 cut(s) 35, 146, 242, 345, 385
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 169, 273
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 2 cut(s) 17, 138
TspGWI ACGGA 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 5 cut(s) 35, 146, 242, 345, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.