RchiOBHm_Chr5g0080491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006968
Physical Location & Seq
Forward (+)
86465347 .. 86466627
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35480

Sequence Viewer

Length: 759 bp
ATGAACATACACCCCACAGTAGTTATGCTCTCTTCTCTGACTCCCTTGCGGGAGGTTTCTCGACGGCGACTTTTTTCAAGGAGCGGTGGTCTTGTGCTTTTGACTGAGAGGAGGGTCCTTTCACCTTTCTCTAGTCTAACTCTTGGTGGTGCCGGCGGGACAACTCGAAGGGGCTCCTTGCTCCTAGGCTGCTGCCTAATTCTTCTTGTCATCGGCTATGGTTGTGGTGATGGTGGCTCTGTTCCAGATCTAAGATTGGATTGGTATGTTAATTATGTGGTTTCTCTAGGGAGGATGGATGCGAAGGCGGGTACCAGTGTTCGGCATGCAGCTTGCATCGATGATCGCATCGATTTGATGGTGGTGATGGTAGATCTGTCTTGCTTGTCGGTGGACTTGAGTTGCTGGGCATCAAATCTGATTATGCAATCTGTCTTTGATGGTGGTTATGATGGCAGTGGTCAGTGTTCCCATGGGAACTTGGGTGGTGGTGGTCTCTGCGGTGGCAGTGGTGGTCTCTATGTGGGTGGTAGTTTCTATAGAGACGGCGGCGGTTTCCAAGAAGCTGACGGCGACGGCAGAATTGTTGAGGAGGCTAGGGTTTCTCCTAAAGTGGCTTGCTGGGCTCTAGGGTTTACCCAAATTGGGCCTTGGATGTGGTTAATTTCGACGGGGCTATGGGTCCATTTTGGGTCATCTCCTGATGCAAAGGATAATGTGGAAGGTGGTCTGTCACCTTCTACTGCAAGTTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

26.47

Weight (kDa)

5.77

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 2 cut(s) 149, 311
AccBSI CCGCTC 1 cut(s) 84
AciI CCGC 7 cut(s) 49, 84, 156, 308, 501, 549, 552
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 321, 645
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 2 cut(s) 332, 566
AluI AGCT 2 cut(s) 332, 566
Alw26I GTCTC 3 cut(s) 500, 521, 537
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 3 cut(s) 189, 192, 329
Asp718I GGTACC 1 cut(s) 311
AspA2I CCTAGG 1 cut(s) 184
AspS9I GGNCC 3 cut(s) 115, 647, 682
AsuHPI GGTGA 4 cut(s) 114, 239, 376, 726
AvaII GGWCC 2 cut(s) 115, 682
AvrII CCTAGG 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BanI GGYRCC 2 cut(s) 149, 311
BanII GRGCYC 2 cut(s) 176, 628
BbvI GCAGC 3 cut(s) 176, 179, 341
BccI CCATC 6 cut(s) 224, 289, 352, 361, 434, 446
BceAI ACGGC 4 cut(s) 80, 562, 586, 592
BcoDI GTCTC 3 cut(s) 500, 521, 537
BfaI CTAG 5 cut(s) 132, 185, 287, 597, 629
BfmI CTRYAG 1 cut(s) 538
BglII AGATCT 2 cut(s) 247, 373
BisI GCNGC 4 cut(s) 190, 193, 330, 550
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 4 cut(s) 191, 194, 331, 551
Bme18I GGWCC 2 cut(s) 115, 682
BmgT120I GGNCC 3 cut(s) 115, 647, 682
BmiI GGNNCC 5 cut(s) 116, 151, 175, 313, 683
BmsI GCATC 5 cut(s) 289, 345, 357, 419, 694
BpuEI CTTGAG 1 cut(s) 418
Bsa29I ATCGAT 2 cut(s) 339, 351
BsaI GGTCTC 2 cut(s) 500, 521
BsaJI CCNNGG 3 cut(s) 184, 472, 650
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 645
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 315
BseCI ATCGAT 2 cut(s) 339, 351
BseDI CCNNGG 3 cut(s) 184, 472, 650
BseGI GGATG 3 cut(s) 300, 304, 660
BseLI CCNNNNNNNGG 2 cut(s) 321, 645
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 315
BseRI GAGGAG 2 cut(s) 124, 605
BseXI GCAGC 3 cut(s) 176, 179, 341
BseYI CCCAGC 2 cut(s) 405, 621
BshFI GGCC 1 cut(s) 649
BshNI GGYRCC 2 cut(s) 149, 311
BshVI ATCGAT 2 cut(s) 339, 351
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 321, 645
BsmAI GTCTC 3 cut(s) 500, 521, 537
BsmBI CGTCTC 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 649
Bso31I GGTCTC 2 cut(s) 500, 521
Bsp1286I GDGCHC 2 cut(s) 176, 628
Bsp143I GATC 3 cut(s) 247, 343, 373
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 7 cut(s) 49, 84, 156, 308, 501, 549, 552
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 2 cut(s) 339, 351
BspLI GGNNCC 5 cut(s) 116, 151, 175, 313, 683
BspT107I GGYRCC 2 cut(s) 149, 311
BspTNI GGTCTC 2 cut(s) 500, 521
BsrBI CCGCTC 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 184, 472, 650
BssMI GATC 3 cut(s) 247, 343, 373
BssT1I CCWWGG 3 cut(s) 184, 472, 650
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 4 cut(s) 154, 327, 334, 619
BstDEI CTNAG 2 cut(s) 105, 251
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 3 cut(s) 300, 304, 660
BstKTI GATC 3 cut(s) 250, 346, 376
BstMAI GTCTC 3 cut(s) 500, 521, 537
BstMBI GATC 3 cut(s) 247, 343, 373
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNSI RCATGY 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 538
BstV1I GCAGC 3 cut(s) 176, 179, 341
BstX2I RGATCY 2 cut(s) 247, 373
BstYI RGATCY 2 cut(s) 247, 373
Bsu15I ATCGAT 2 cut(s) 339, 351
BsuRI GGCC 1 cut(s) 649
BsuTUI ATCGAT 2 cut(s) 339, 351
BtgI CCRYGG 1 cut(s) 472
BtsCI GGATG 3 cut(s) 300, 304, 660
BtsI GCAGTG 2 cut(s) 463, 514
BtsIMutI CAGTG 4 cut(s) 322, 463, 470, 514
Cac8I GCNNGC 4 cut(s) 154, 327, 334, 619
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 115, 647, 682
ClaI ATCGAT 2 cut(s) 339, 351
Csp6I GTAC 1 cut(s) 312
CviAII CATG 2 cut(s) 326, 473
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 2 cut(s) 105, 251
DpnI GATC 3 cut(s) 249, 345, 375
DpnII GATC 3 cut(s) 247, 343, 373
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 184, 472, 650
Eco24I GRGCYC 2 cut(s) 176, 628
Eco31I GGTCTC 2 cut(s) 500, 521
Eco47I GGWCC 2 cut(s) 115, 682
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 184, 472, 650
EcoT38I GRGCYC 2 cut(s) 176, 628
ErhI CCWWGG 3 cut(s) 184, 472, 650
Esp3I CGTCTC 1 cut(s) 537
FaeI CATG 2 cut(s) 329, 476
FaqI GGGAC 1 cut(s) 172
FatI CATG 2 cut(s) 325, 472
FauI CCCGC 3 cut(s) 42, 149, 301
Fnu4HI GCNGC 4 cut(s) 190, 193, 330, 550
FokI GGATG 3 cut(s) 307, 311, 667
FriOI GRGCYC 2 cut(s) 176, 628
Fsp4HI GCNGC 4 cut(s) 190, 193, 330, 550
FspBI CTAG 5 cut(s) 132, 185, 287, 597, 629
GluI GCNGC 4 cut(s) 190, 193, 330, 550
GsaI CCCAGC 2 cut(s) 409, 625
HaeIII GGCC 1 cut(s) 649
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 329, 476
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 153
HphI GGTGA 4 cut(s) 114, 239, 376, 726
Hpy166II GTNNAC 2 cut(s) 394, 636
Hpy188I TCNGA 2 cut(s) 39, 420
Hpy188III TCNNGA 3 cut(s) 60, 245, 701
Hpy8I GTNNAC 2 cut(s) 394, 636
Hpy99I CGWCG 3 cut(s) 66, 578, 673
HpyAV CCTTC 4 cut(s) 162, 298, 716, 747
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 5 cut(s) 329, 336, 427, 707, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 2 cut(s) 105, 251
Hsp92II CATG 2 cut(s) 329, 476
KpnI GGTACC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 3 cut(s) 247, 343, 373
LmnI GCTCC 3 cut(s) 81, 179, 186
LpnPI CCDG 6 cut(s) 166, 258, 328, 391, 607, 714
Lsp1109I GCAGC 3 cut(s) 176, 179, 341
LweI GCATC 5 cut(s) 289, 345, 357, 419, 694
MaeI CTAG 5 cut(s) 132, 185, 287, 597, 629
MaeIII GTNAC 1 cut(s) 732
MalI GATC 3 cut(s) 249, 345, 375
MbiI CCGCTC 1 cut(s) 84
MboI GATC 3 cut(s) 247, 343, 373
MboII GAAGA 2 cut(s) 24, 194
MflI RGATCY 2 cut(s) 247, 373
MhlI GDGCHC 2 cut(s) 176, 628
MluCI AATT 6 cut(s) 198, 271, 582, 642, 663, 753
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 6 cut(s) 46, 102, 105, 285, 583, 586
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 4 cut(s) 270, 662, 752, 757
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 623
NaeI GCCGGC 1 cut(s) 154
NcoI CCATGG 1 cut(s) 472
NdeII GATC 3 cut(s) 247, 343, 373
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 329, 476
NlaIV GGNNCC 5 cut(s) 116, 151, 175, 313, 683
NmuCI GTSAC 1 cut(s) 732
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PdiI GCCGGC 1 cut(s) 154
PkrI GCNGC 4 cut(s) 191, 194, 331, 551
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspFI CCCAGC 2 cut(s) 405, 621
PspN4I GGNNCC 5 cut(s) 116, 151, 175, 313, 683
PspPI GGNCC 3 cut(s) 115, 647, 682
PspPPI RGGWCCY 1 cut(s) 115
PsuI RGATCY 2 cut(s) 247, 373
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 270, 662, 752, 757
SatI GCNGC 4 cut(s) 190, 193, 330, 550
Sau3AI GATC 3 cut(s) 247, 343, 373
Sau96I GGNCC 3 cut(s) 115, 647, 682
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 2 cut(s) 176, 628
SetI ASST 6 cut(s) 57, 127, 334, 568, 727, 739
SfaNI GCATC 5 cut(s) 289, 345, 357, 419, 694
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 2 cut(s) 115, 682
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
SphI GCATGC 1 cut(s) 329
Sse9I AATT 6 cut(s) 198, 271, 582, 642, 663, 753
SsiI CCGC 7 cut(s) 49, 84, 156, 308, 501, 549, 552
SspMI CTAG 5 cut(s) 132, 185, 287, 597, 629
StyI CCWWGG 3 cut(s) 184, 472, 650
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 5 cut(s) 61, 166, 339, 351, 668
TasI AATT 6 cut(s) 198, 271, 582, 642, 663, 753
TauI GCSGC 1 cut(s) 552
Tru1I TTAA 4 cut(s) 270, 662, 752, 757
Tru9I TTAA 4 cut(s) 270, 662, 752, 757
TscAI CASTG 4 cut(s) 322, 463, 470, 514
TseFI GTSAC 1 cut(s) 732
TseI GCWGC 3 cut(s) 189, 192, 329
Tsp45I GTSAC 1 cut(s) 732
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 322, 463, 470, 514
VpaK11BI GGWCC 2 cut(s) 115, 682
XceI RCATGY 1 cut(s) 329
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 5 cut(s) 132, 185, 287, 597, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.