RLG00000009306

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006968
Physical Location & Seq
Forward (+)
50589761 .. 50590359
599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009306

Sequence Viewer

Length: 477 bp
ATGCTATCTTCTCTGACTCCCTTGCGGGAGGTTTCTCGACGGCAAATTTTATCAAGGAGTGGCGATCTTGTGCTTTTGACTGAGAGGAGGGTCCTTTCACTTTTCTCTAGTCTAACTCTTGGTGGTGCCGGCGGGACAACTCGACGGGGCTCCTTACTCCTAGGCTGCTGCCTAATTCTTCTCGTCGCTGGCTATGGTTGCGGTGATGGTGGCTCTGTTCTCAATATAAGATTGGATCGGTATGTTAATTATGGGGGTTCTCTAGGGAGGATGGATGCGAAGGCGGGTACCAGTGTTCGGCATGCAGCTTGCGGCGATGATTGGTCAGTGGTCAGTGTTCCCGTGGGAACTTGGGTGGTGGTGGTCTCTACGGTGGCAGTGGTGGTCTCTATGGGGGTGGCAGTTTTTATAAAGACAGTGGAGATGGCGGCGGCTTTTAAGGGGGTGACGGCGACGGCAGAATTGTTGGGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.35

Weight (kDa)

9.38

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 2 cut(s) 125, 287
AciI CCGC 7 cut(s) 25, 132, 201, 284, 312, 428, 431
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 45
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 297
AluBI AGCT 2 cut(s) 308, 474
AluI AGCT 2 cut(s) 308, 474
Alw26I GTCTC 2 cut(s) 370, 391
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 165, 168, 305
ApoI RAATTY 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 287
AspA2I CCTAGG 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 215, 457
AvaII GGWCC 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 160
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BanI GGYRCC 2 cut(s) 125, 287
BanII GRGCYC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 152, 155, 317
BccI CCATC 3 cut(s) 200, 265, 418
BceAI ACGGC 3 cut(s) 56, 465, 471
BcoDI GTCTC 2 cut(s) 370, 391
BfaI CTAG 4 cut(s) 108, 161, 263, 475
BisI GCNGC 6 cut(s) 166, 169, 306, 313, 429, 432
BlnI CCTAGG 1 cut(s) 160
BlsI GCNGC 6 cut(s) 167, 170, 307, 314, 430, 433
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 4 cut(s) 92, 127, 151, 289
BmsI GCATC 1 cut(s) 265
BsaI GGTCTC 2 cut(s) 370, 391
BsaJI CCNNGG 2 cut(s) 160, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 160, 342
BseGI GGATG 2 cut(s) 276, 280
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 152, 155, 317
BshNI GGYRCC 2 cut(s) 125, 287
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 370, 391
BsmFI GGGAC 1 cut(s) 148
Bso31I GGTCTC 2 cut(s) 370, 391
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 64, 235
BspACI CCGC 7 cut(s) 25, 132, 201, 284, 312, 428, 431
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 4 cut(s) 92, 127, 151, 289
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 2 cut(s) 125, 287
BspTNI GGTCTC 2 cut(s) 370, 391
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 160, 342
BssMI GATC 2 cut(s) 64, 235
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 373, 418
BstC8I GCNNGC 4 cut(s) 130, 190, 303, 310
BstDEI CTNAG 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 276, 280
BstKTI GATC 2 cut(s) 67, 238
BstMAI GTCTC 2 cut(s) 370, 391
BstMBI GATC 2 cut(s) 64, 235
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 152, 155, 317
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 276, 280
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 5 cut(s) 298, 333, 340, 384, 423
Cac8I GCNNGC 4 cut(s) 130, 190, 303, 310
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 288
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 150, 165, 192, 213, 308, 434, 474
CviKI_1 RGCY 7 cut(s) 150, 165, 192, 213, 308, 434, 474
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 66, 237
DpnII GATC 2 cut(s) 64, 235
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 2 cut(s) 370, 391
Eco47I GGWCC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 305
FaiI YATR 7 cut(s) 195, 227, 243, 252, 303, 392, 410
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 301
FauI CCCGC 3 cut(s) 18, 125, 277
Fnu4HI GCNGC 6 cut(s) 166, 169, 306, 313, 429, 432
FokI GGATG 2 cut(s) 283, 287
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 6 cut(s) 166, 169, 306, 313, 429, 432
FspBI CTAG 4 cut(s) 108, 161, 263, 475
GluI GCNGC 6 cut(s) 166, 169, 306, 313, 429, 432
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 305
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 215, 457
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 4 cut(s) 42, 147, 188, 457
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 373, 418
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 305
KpnI GGTACC 1 cut(s) 291
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 64, 235
LmnI GCTCC 2 cut(s) 155, 471
LpnPI CCDG 3 cut(s) 142, 174, 304
Lsp1109I GCAGC 3 cut(s) 152, 155, 317
LweI GCATC 1 cut(s) 265
MaeI CTAG 4 cut(s) 108, 161, 263, 475
MaeIII GTNAC 1 cut(s) 445
MalI GATC 2 cut(s) 66, 237
MboI GATC 2 cut(s) 64, 235
MboII GAAGA 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 4 cut(s) 45, 174, 247, 461
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 4 cut(s) 22, 78, 81, 261
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 2 cut(s) 246, 438
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 198
NaeI GCCGGC 1 cut(s) 130
NdeII GATC 2 cut(s) 64, 235
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 4 cut(s) 92, 127, 151, 289
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PdiI GCCGGC 1 cut(s) 130
PkrI GCNGC 6 cut(s) 167, 170, 307, 314, 430, 433
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 91
PsiI TTATAA 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 4 cut(s) 92, 127, 151, 289
PspPI GGNCC 1 cut(s) 91
PspPPI RGGWCCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 246, 438
SatI GCNGC 6 cut(s) 166, 169, 306, 313, 429, 432
Sau3AI GATC 2 cut(s) 64, 235
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 152
SetI ASST 3 cut(s) 33, 310, 476
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 91
SphI GCATGC 1 cut(s) 305
Sse9I AATT 4 cut(s) 45, 174, 247, 461
SsiI CCGC 7 cut(s) 25, 132, 201, 284, 312, 428, 431
SspMI CTAG 4 cut(s) 108, 161, 263, 475
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 373, 418
TaqI TCGA 2 cut(s) 37, 142
TasI AATT 4 cut(s) 45, 174, 247, 461
TauI GCSGC 3 cut(s) 315, 431, 434
Tru1I TTAA 2 cut(s) 246, 438
Tru9I TTAA 2 cut(s) 246, 438
TscAI CASTG 5 cut(s) 298, 333, 340, 384, 423
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 165, 168, 305
Tsp45I GTSAC 1 cut(s) 445
TspRI CASTG 5 cut(s) 298, 333, 340, 384, 423
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 305
XmaJI CCTAGG 1 cut(s) 160
XspI CTAG 4 cut(s) 108, 161, 263, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.