Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Reverse (-)

46204894 .. 46207369

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGAAGGAAAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGGTGAAGCGGAAGGAAGAATATGTCAGAGAGAGTCACATGGAGGTTTCTCGACGGCGGCTTTTATCAGGGAGTGGCGGTCTTGTGCTTTTGACTGAGACGAGGGTCCTTTCACCTTTCTCTAGTCTAACTCTTGGTGGTGCCGGCGGGACAACTCGACGGGGCTCCTTGCTCTTAGGCTGCTGCCTAATTCTTCTCGTCGCCGGCTATGGATGTGGTGATGGTGGTTCTGTTACTGATTTGAGATTGGATCGGTATGTTAATGATGTGGGAACTATGGGGAGGATGAATGCGAGGACAAGTACGGGTGTTCAGCTTGCGGCTTGCGGCGATGATTGGTTAGGTTGGTTTGCCTGGGATTGCATTGATCCGATGGCGGTGATGGTGGACTCGTCTTGCTTGTCGAGGGACTTGAGTTGTTGGGTATCATATCCGACTATGCAATCTGTCCTTGATGGTGGTTATGACGGTAGTGGTCAGTGTTCCCATGGGATCTTGGGCGGCGGTGGTCTCTACAGTGACAGTGGTGGTCTCTATGGGGGTGGCAGTTTCTATAGAGACGGCGGGGGTTTCCAAGAGGGTGACAGCAACGGCAGAATTGTTAGGGAGGCTGGGGATCTCCTAAAGTGGCTTGCTGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.37

Weight (kDa)

8.78

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AclWI	GGATC	4 cut(s)	297, 401, 539, 663
AfaI	GTAC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	4 cut(s)	131, 554, 575, 591
AlwI	GGATC	4 cut(s)	297, 401, 539, 663
ApeKI	GCWGC	2 cut(s)	219, 222
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	55, 144, 269, 430, 632
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	206, 681
BbvI	GCAGC	2 cut(s)	206, 209
BccI	CCATC	4 cut(s)	254, 406, 415, 488
BceAI	ACGGC	3 cut(s)	110, 616, 646
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	4 cut(s)	131, 554, 575, 591
BfaI	CTAG	2 cut(s)	162, 682
BfmI	CTRYAG	2 cut(s)	553, 592
BisI	GCNGC	6 cut(s)	98, 220, 223, 360, 367, 541
BlsI	GCNGC	6 cut(s)	99, 221, 224, 361, 368, 542
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	3 cut(s)	146, 181, 205
BmrFI	CCNGG	1 cut(s)	394
BoxI	GACNNNNGTC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	472
BsaI	GGTCTC	2 cut(s)	554, 575
BsaJI	CCNNGG	2 cut(s)	393, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse118I	RCCGGY	2 cut(s)	182, 242
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	393, 526
BseGI	GGATG	2 cut(s)	257, 330
BseMII	CTCAG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	206, 209
BseYI	CCCAGC	2 cut(s)	650, 674
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	183, 243
BslFI	GGGAC	2 cut(s)	202, 461
BsmAI	GTCTC	4 cut(s)	131, 554, 575, 591
BsmBI	CGTCTC	2 cut(s)	131, 591
BsmFI	GGGAC	2 cut(s)	202, 461
BsmI	GAATGC	1 cut(s)	334
Bso31I	GGTCTC	2 cut(s)	554, 575
Bsp1286I	GDGCHC	2 cut(s)	206, 681
Bsp143I	GATC	4 cut(s)	289, 406, 531, 655
Bsp19I	CCATGG	1 cut(s)	526
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	146, 181, 205
BspPI	GGATC	4 cut(s)	297, 401, 539, 663
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	2 cut(s)	554, 575
BsrFI	RCCGGY	2 cut(s)	182, 242
BssAI	RCCGGY	2 cut(s)	182, 242
BssECI	CCNNGG	2 cut(s)	393, 526
BssMI	GATC	4 cut(s)	289, 406, 531, 655
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	3 cut(s)	509, 557, 563
Bst6I	CTCTTC	4 cut(s)	11, 17, 23, 29
BstC8I	GCNNGC	5 cut(s)	184, 244, 357, 364, 672
BstDEI	CTNAG	2 cut(s)	135, 214
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	257, 330
BstKTI	GATC	4 cut(s)	292, 409, 534, 658
BstMAI	GTCTC	4 cut(s)	131, 554, 575, 591
BstMBI	GATC	4 cut(s)	289, 406, 531, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	676
BstNI	CCWGG	1 cut(s)	394
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	553, 592
BstV1I	GCAGC	2 cut(s)	206, 209
BstX2I	RGATCY	2 cut(s)	531, 655
BstYI	RGATCY	2 cut(s)	531, 655
BtgI	CCRYGG	1 cut(s)	526
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	257, 330
BtsIMutI	CAGTG	3 cut(s)	524, 562, 568
Cac8I	GCNNGC	5 cut(s)	184, 244, 357, 364, 672
Cfr10I	RCCGGY	2 cut(s)	182, 242
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	79, 527
CviJI	RGCY	9 cut(s)	100, 204, 219, 246, 355, 362, 650, 670, 679
CviKI_1	RGCY	9 cut(s)	100, 204, 219, 246, 355, 362, 650, 670, 679
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	2 cut(s)	135, 214
DpnI	GATC	4 cut(s)	291, 408, 533, 657
DpnII	GATC	4 cut(s)	289, 406, 531, 655
Eam1104I	CTCTTC	4 cut(s)	11, 17, 23, 29
EarI	CTCTTC	4 cut(s)	11, 17, 23, 29
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	206, 681
Eco31I	GGTCTC	2 cut(s)	554, 575
Eco47I	GGWCC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	206, 681
ErhI	CCWWGG	1 cut(s)	526
Esp3I	CGTCTC	2 cut(s)	131, 591
FaeI	CATG	2 cut(s)	82, 530
FaqI	GGGAC	2 cut(s)	202, 461
FatI	CATG	2 cut(s)	78, 526
FauI	CCCGC	2 cut(s)	179, 596
Fnu4HI	GCNGC	6 cut(s)	98, 220, 223, 360, 367, 541
FokI	GGATG	2 cut(s)	264, 337
FriOI	GRGCYC	2 cut(s)	206, 681
Fsp4HI	GCNGC	6 cut(s)	98, 220, 223, 360, 367, 541
FspBI	CTAG	2 cut(s)	162, 682
GluI	GCNGC	6 cut(s)	98, 220, 223, 360, 367, 541
GsaI	CCCAGC	2 cut(s)	654, 678
HapII	CCGG	2 cut(s)	183, 243
Hin1II	CATG	2 cut(s)	82, 530
HinfI	GANTC	2 cut(s)	73, 428
HpaII	CCGG	2 cut(s)	183, 243
HphI	GGTGA	5 cut(s)	55, 144, 269, 430, 632
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	68, 411, 474
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	3 cut(s)	96, 201, 242
HpyAV	CCTTC	2 cut(s)	34, 46
HpyCH4III	ACNGT	3 cut(s)	509, 557, 563
HpyCH4V	TGCA	2 cut(s)	402, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	676
HpyF3I	CTNAG	2 cut(s)	135, 214
Hsp92II	CATG	2 cut(s)	82, 530
KroI	GCCGGC	2 cut(s)	182, 242
KroNI	GCCGGC	2 cut(s)	184, 244
Kzo9I	GATC	4 cut(s)	289, 406, 531, 655
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	93, 196, 256, 379, 406, 636, 660
Lsp1109I	GCAGC	2 cut(s)	206, 209
MaeI	CTAG	2 cut(s)	162, 682
MaeIII	GTNAC	4 cut(s)	74, 271, 557, 620
MalI	GATC	4 cut(s)	291, 408, 533, 657
MboI	GATC	4 cut(s)	289, 406, 531, 655
MboII	GAAGA	6 cut(s)	28, 34, 40, 46, 68, 224
MflI	RGATCY	2 cut(s)	531, 655
MhlI	GDGCHC	2 cut(s)	206, 681
MluCI	AATT	2 cut(s)	228, 636
MlyI	GAGTC	2 cut(s)	82, 422
MmeI	TCCRAC	1 cut(s)	497
MroNI	GCCGGC	2 cut(s)	182, 242
MseI	TTAA	1 cut(s)	300
MspI	CCGG	2 cut(s)	183, 243
MspR9I	CCNGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	676
NaeI	GCCGGC	2 cut(s)	184, 244
NcoI	CCATGG	1 cut(s)	526
NdeII	GATC	4 cut(s)	289, 406, 531, 655
NgoMIV	GCCGGC	2 cut(s)	182, 242
NlaIII	CATG	2 cut(s)	82, 530
NlaIV	GGNNCC	3 cut(s)	146, 181, 205
NmuCI	GTSAC	3 cut(s)	74, 557, 620
PctI	GAATGC	1 cut(s)	334
PdiI	GCCGGC	2 cut(s)	184, 244
PkrI	GCNGC	6 cut(s)	99, 221, 224, 361, 368, 542
PleI	GAGTC	2 cut(s)	81, 422
PpsI	GAGTC	2 cut(s)	81, 422
PpuMI	RGGWCCY	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	392
PspFI	CCCAGC	2 cut(s)	650, 674
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	146, 181, 205
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	531, 655
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	6 cut(s)	98, 220, 223, 360, 367, 541
Sau3AI	GATC	4 cut(s)	289, 406, 531, 655
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	82, 422
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	206, 681
SetI	ASST	5 cut(s)	45, 87, 157, 357, 385
SfcI	CTRYAG	2 cut(s)	553, 592
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	2 cut(s)	228, 636
SspMI	CTAG	2 cut(s)	162, 682
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	3 cut(s)	509, 557, 563
TaqI	TCGA	3 cut(s)	91, 196, 443
TasI	AATT	2 cut(s)	228, 636
TauI	GCSGC	4 cut(s)	100, 362, 369, 543
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	3 cut(s)	524, 562, 568
TseFI	GTSAC	3 cut(s)	74, 557, 620
TseI	GCWGC	2 cut(s)	219, 222
Tsp45I	GTSAC	3 cut(s)	74, 557, 620
TspDTI	ATGAA	1 cut(s)	341
TspRI	CASTG	3 cut(s)	524, 562, 568
VpaK11BI	GGWCC	1 cut(s)	145
XspI	CTAG	2 cut(s)	162, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.