Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Reverse (-)

29796427 .. 29797079

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTCTCGTCTCTGACTCCCGCAAGGGAGGGCGGTGGGTTACTCGACGGGGCTCCTTGCCTAGGCTGTTGCCTAATTCTCCTCGTCATCGGTGCTAGCTGCGGTGATGGTGGGTCTGGGGCCGATCTGAGTTTGGATCGGAGCACTAGCGATGTGGATTCTCTGGGGAGGATAGATGCAAGGGTTGGTATTGGTGTACGACCTGTGGCTTGTGGTGGTGATAGCATCTTTGATCAAATTATGTGGCTTGTCCATGATAGTGATTATGCAGACGTTGGTCAAGGCTTACACAGTTCGGTGGTGTTTGCTATGGTGGCAGTGGTGGTCGAGTTGGGGTCGGTAGTTTCTATGGTGGCAGTGGCGGCTTCCACGAGGACGGCATCGGCAGAATCATACCGGAGGCTAGGGTTTCTCTTCAATGGGCTTGTTGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

14.69

Weight (kDa)

4.45

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	21, 33, 102, 362
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	418
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	99
AspA2I	CCTAGG	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	116, 230
AsuNHI	GCTAGC	1 cut(s)	95
AvrII	CCTAGG	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	55, 435
BauI	CACGAG	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	5 cut(s)	62, 96, 147, 404, 436
BisI	GCNGC	2 cut(s)	100, 363
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	2 cut(s)	101, 364
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	54, 121
BmsI	GCATC	3 cut(s)	166, 234, 389
BmtI	GCTAGC	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	3 cut(s)	55, 146, 435
Bsp143I	GATC	3 cut(s)	124, 136, 232
BspACI	CCGC	4 cut(s)	21, 33, 102, 362
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	54, 121
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	124, 136, 232
BssSI	CACGAG	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	127, 139, 235
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	3 cut(s)	124, 136, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 362, 430
BstPAI	GACNNNNGTC	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	324, 363
BtsIMutI	CAGTG	2 cut(s)	324, 363
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	224, 259
CviAII	CATG	1 cut(s)	254
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	3 cut(s)	126, 138, 234
DpnII	GATC	3 cut(s)	124, 136, 232
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	55, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	55, 435
ErhI	CCWWGG	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	257
FaiI	YATR	6 cut(s)	242, 255, 267, 311, 350, 394
FatI	CATG	1 cut(s)	253
FauI	CCCGC	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	100, 363
FriOI	GRGCYC	2 cut(s)	55, 435
Fsp4HI	GCNGC	2 cut(s)	100, 363
FspBI	CTAG	5 cut(s)	62, 96, 147, 404, 436
GluI	GCNGC	2 cut(s)	100, 363
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	397
Hin1II	CATG	1 cut(s)	257
HinfI	GANTC	3 cut(s)	16, 158, 389
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	116, 230
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	15, 129, 141
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	179, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 362, 430
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	124, 136, 232
LmnI	GCTCC	2 cut(s)	58, 141
LpnPI	CCDG	4 cut(s)	102, 149, 216, 410
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	3 cut(s)	166, 234, 389
MaeI	CTAG	5 cut(s)	62, 96, 147, 404, 436
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	3 cut(s)	126, 138, 234
MboI	GATC	3 cut(s)	124, 136, 232
MboII	GAAGA	1 cut(s)	406
MhlI	GDGCHC	3 cut(s)	55, 146, 435
MluCI	AATT	2 cut(s)	75, 237
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	22, 92, 162, 366, 393
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	3 cut(s)	314, 362, 430
NdeII	GATC	3 cut(s)	124, 136, 232
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	2 cut(s)	54, 121
PfeI	GAWTC	2 cut(s)	158, 389
PkrI	GCNGC	2 cut(s)	101, 364
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	54, 121
PspPI	GGNCC	1 cut(s)	120
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	2 cut(s)	100, 363
Sau3AI	GATC	3 cut(s)	124, 136, 232
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	3 cut(s)	55, 146, 435
SetI	ASST	3 cut(s)	101, 205, 276
SfaNI	GCATC	3 cut(s)	166, 234, 389
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	75, 237
SsiI	CCGC	4 cut(s)	21, 33, 102, 362
SspMI	CTAG	5 cut(s)	62, 96, 147, 404, 436
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	45, 327
TasI	AATT	2 cut(s)	75, 237
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	158, 389
TscAI	CASTG	2 cut(s)	324, 363
TseI	GCWGC	1 cut(s)	99
TspRI	CASTG	2 cut(s)	324, 363
XagI	CCTNNNNNAGG	1 cut(s)	60
XmaJI	CCTAGG	1 cut(s)	61
XspI	CTAG	5 cut(s)	62, 96, 147, 404, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.