RLG00000034207

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006968
Physical Location & Seq
Forward (+)
38406320 .. 38406831
512 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034207

Sequence Viewer

Length: 432 bp
ATGCGTCGCCCGCAAGGGAGTCTCTTTCTTGGTGGTGCCGGTGGGGCTACTCGACGGGGCTCCTTGCTCCTAGGTTGTTGCCTAATTCTCCTCGTCGTAGGTGCTAGCTGCGGTGATGGTGGGGATGGGGCCGATCTGAGTTTAGATCGAAGCACTAGTACTGTGGATTCTCTGGGGAGGATAGATGCGAGGATGGGTATTGGTGTACGACCTGTGGCTTGTGGTGGTGATTGCCGCGTTGATTCTTCAGGTTGGCACTACTGGGATCACATGGCTCCGAGGGGGGTGATGGTGGATTGGTTTTGCTTGAAGGGTCTGGGGTACTACAGATCGGATCAAATTATGCAGTCTGTCCATGATCGTGATTATGCCATGGTGGTCAAGGTTCCTATCTGTGCGGCGGTGTTTATTATGGTGGCAGTGGTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.2

Weight (kDa)

7.59

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 237
AciI CCGC 5 cut(s) 11, 111, 235, 398, 401
AclWI GGATC 2 cut(s) 273, 342
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 3 cut(s) 160, 207, 323
AgsI TTSAA 1 cut(s) 310
AhlI ACTAGT 1 cut(s) 155
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 2 cut(s) 273, 342
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 108
AspA2I CCTAGG 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 125, 239, 298
AsuNHI GCTAGC 1 cut(s) 104
AvrII CCTAGG 1 cut(s) 70
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 142, 174
BbvI GCAGC 1 cut(s) 95
BccI CCATC 4 cut(s) 110, 119, 187, 283
BcoDI GTCTC 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 4 cut(s) 71, 105, 156, 430
BfmI CTRYAG 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 3 cut(s) 109, 235, 399
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 3 cut(s) 110, 236, 400
BmcAI AGTACT 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 5 cut(s) 37, 61, 130, 276, 387
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 175
BmtI GCTAGC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 70, 278, 372
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 70, 278, 372
BseGI GGATG 2 cut(s) 130, 198
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 6 cut(s) 133, 145, 265, 329, 334, 358
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 5 cut(s) 11, 111, 235, 398, 401
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 5 cut(s) 37, 61, 130, 276, 387
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 2 cut(s) 273, 342
BspT107I GGYRCC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 70, 278, 372
BssMI GATC 6 cut(s) 133, 145, 265, 329, 334, 358
BssT1I CCWWGG 2 cut(s) 70, 372
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 11, 106
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 130, 198
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 6 cut(s) 136, 148, 268, 332, 337, 361
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 6 cut(s) 133, 145, 265, 329, 334, 358
BstMWI GCNNNNNNNGC 2 cut(s) 10, 44
BstSFI CTRYAG 1 cut(s) 325
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 130, 198
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 11, 106
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 159, 206, 322
CviAII CATG 3 cut(s) 271, 356, 373
CviJI RGCY 6 cut(s) 47, 60, 108, 131, 218, 275
CviKI_1 RGCY 6 cut(s) 47, 60, 108, 131, 218, 275
CviQI GTAC 3 cut(s) 159, 206, 322
DdeI CTNAG 1 cut(s) 137
DpnI GATC 6 cut(s) 135, 147, 267, 331, 336, 360
DpnII GATC 6 cut(s) 133, 145, 265, 329, 334, 358
Eco130I CCWWGG 2 cut(s) 70, 372
Eco24I GRGCYC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 70, 372
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 2 cut(s) 70, 372
FaeI CATG 3 cut(s) 274, 359, 376
FaiI YATR 6 cut(s) 272, 344, 357, 369, 374, 413
FatI CATG 3 cut(s) 270, 355, 372
FauI CCCGC 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 109, 235, 399
FokI GGATG 2 cut(s) 137, 205
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 109, 235, 399
FspBI CTAG 4 cut(s) 71, 105, 156, 430
GluI GCNGC 3 cut(s) 109, 235, 399
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 39
Hin1II CATG 3 cut(s) 274, 359, 376
HinfI GANTC 3 cut(s) 19, 167, 242
HpaII CCGG 1 cut(s) 39
HphI GGTGA 3 cut(s) 125, 239, 298
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 138, 279, 334
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 3 cut(s) 9, 57, 98
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 44
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 3 cut(s) 274, 359, 376
Kzo9I GATC 6 cut(s) 133, 145, 265, 329, 334, 358
LmnI GCTCC 3 cut(s) 65, 72, 280
LpnPI CCDG 6 cut(s) 52, 158, 225, 234, 247, 302
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 175
MaeI CTAG 4 cut(s) 71, 105, 156, 430
MalI GATC 6 cut(s) 135, 147, 267, 331, 336, 360
MboI GATC 6 cut(s) 133, 145, 265, 329, 334, 358
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 2 cut(s) 84, 339
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 4 cut(s) 101, 171, 183, 273
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 10, 44
NcoI CCATGG 1 cut(s) 372
NdeII GATC 6 cut(s) 133, 145, 265, 329, 334, 358
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 3 cut(s) 274, 359, 376
NlaIV GGNNCC 5 cut(s) 37, 61, 130, 276, 387
PfeI GAWTC 2 cut(s) 167, 242
PkrI GCNGC 3 cut(s) 110, 236, 400
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspN4I GGNNCC 5 cut(s) 37, 61, 130, 276, 387
PspPI GGNCC 1 cut(s) 129
RsaI GTAC 3 cut(s) 160, 207, 323
RsaNI GTAC 3 cut(s) 159, 206, 322
RseI CAYNNNNRTG 1 cut(s) 360
SatI GCNGC 3 cut(s) 109, 235, 399
Sau3AI GATC 6 cut(s) 133, 145, 265, 329, 334, 358
Sau96I GGNCC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 76, 103, 110, 214, 253, 387
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 360
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 2 cut(s) 84, 339
SsiI CCGC 5 cut(s) 11, 111, 235, 398, 401
SspMI CTAG 4 cut(s) 71, 105, 156, 430
StyI CCWWGG 2 cut(s) 70, 372
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 52, 148
TasI AATT 2 cut(s) 84, 339
TatI WGTACW 1 cut(s) 158
TauI GCSGC 2 cut(s) 237, 401
TfiI GAWTC 2 cut(s) 167, 242
TscAI CASTG 1 cut(s) 426
TseI GCWGC 1 cut(s) 108
TspRI CASTG 1 cut(s) 426
XmaJI CCTAGG 1 cut(s) 70
XspI CTAG 4 cut(s) 71, 105, 156, 430
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.