Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

6543390 .. 6544073

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCGGCTTCTTTCCGGAGTGGCGGTCTTGTGCTTTTGACCGAGATTAGGGTCCTCTCTCCTTTCTCTAGTCTAATTCTTGGTGGGGCTGGTAGGATAACTCGACGGGGCTTCTTGCTCCTAGGCTGCTGCCTCATTCTTCTAGTCGTCGTCTCGGCTATGGTGATGGTGGCTATGATACCGATCCGAGGTTGGAACGGTATGTTATTGATATGGGTTTTCTGCGGAGAATGGAGGCAAGGGAAGTGGTGGACTCGTGGTGGTCTCTATGGGGATGGCAGTTTCAGTGGAGATGGCAGCGGCTTCCAAGAAGGCGGCAGCGATGGCATAATTGTTGGCAAGGCTAGGGTTTCTTCTAAATGGGCTTATTGGGCTCTAGTTTGGGGCTGGGCAAAGGCCTGCTGGGTTTGCATATTTTTGGAGGGAATGGAAGGTGATCTGTCACCTTCCACTCCTAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.68

Weight (kDa)

8.99

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	5 cut(s)	5, 24, 225, 300, 315
AclWI	GGATC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	48, 188
Alw26I	GTCTC	2 cut(s)	157, 269
AlwI	GGATC	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	126, 129, 297, 318
AspA2I	CCTAGG	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	175, 435, 446
AvaII	GGWCC	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	255
BbvI	GCAGC	4 cut(s)	113, 116, 309, 330
BccI	CCATC	4 cut(s)	160, 269, 287, 317
BcoDI	GTCTC	2 cut(s)	157, 269
BfaI	CTAG	6 cut(s)	69, 122, 143, 345, 377, 456
BisI	GCNGC	7 cut(s)	6, 127, 130, 298, 301, 316, 319
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	7 cut(s)	7, 128, 131, 299, 302, 317, 320
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	121, 187
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 188
Bse8I	GATNNNNATC	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	121, 187
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	48, 188
BseXI	GCAGC	4 cut(s)	113, 116, 309, 330
BseYI	CCCAGC	2 cut(s)	387, 402
BshFI	GGCC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	48, 188
BsmAI	GTCTC	2 cut(s)	157, 269
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	398
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	183, 436
BspACI	CCGC	5 cut(s)	5, 24, 225, 300, 315
BspANI	GGCC	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	121, 187
BssMI	GATC	2 cut(s)	183, 436
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	186, 439
BstMAI	GTCTC	2 cut(s)	157, 269
BstMBI	GATC	2 cut(s)	183, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 371, 408
BstV1I	GCAGC	4 cut(s)	113, 116, 309, 330
BsuRI	GGCC	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	227, 262
DpnI	GATC	2 cut(s)	185, 438
DpnII	GATC	2 cut(s)	183, 436
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	157
FaiI	YATR	7 cut(s)	161, 176, 203, 214, 270, 329, 413
Fnu4HI	GCNGC	7 cut(s)	6, 127, 130, 298, 301, 316, 319
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	7 cut(s)	6, 127, 130, 298, 301, 316, 319
FspBI	CTAG	6 cut(s)	69, 122, 143, 345, 377, 456
GluI	GCNGC	7 cut(s)	6, 127, 130, 298, 301, 316, 319
GsaI	CCCAGC	2 cut(s)	391, 406
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	3 cut(s)	175, 435, 446
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	2 cut(s)	108, 152
HpyAV	CCTTC	3 cut(s)	305, 425, 456
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 371, 408
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	183, 436
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	5 cut(s)	29, 75, 373, 388, 412
Lsp1109I	GCAGC	4 cut(s)	113, 116, 309, 330
MaeI	CTAG	6 cut(s)	69, 122, 143, 345, 377, 456
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	2 cut(s)	185, 438
MboI	GATC	2 cut(s)	183, 436
MboII	GAAGA	2 cut(s)	131, 345
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	2 cut(s)	75, 330
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	65, 143, 182, 228, 415
MroI	TCCGGA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	324, 371, 408
NdeII	GATC	2 cut(s)	183, 436
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	441
PceI	AGGCCT	1 cut(s)	398
PkrI	GCNGC	7 cut(s)	7, 128, 131, 299, 302, 317, 320
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
PspFI	CCCAGC	2 cut(s)	387, 402
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
SatI	GCNGC	7 cut(s)	6, 127, 130, 298, 301, 316, 319
Sau3AI	GATC	2 cut(s)	183, 436
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	3 cut(s)	193, 436, 448
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	75, 330
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	5 cut(s)	5, 24, 225, 300, 315
SspMI	CTAG	6 cut(s)	69, 122, 143, 345, 377, 456
StuI	AGGCCT	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	75, 330
TauI	GCSGC	3 cut(s)	8, 303, 318
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	4 cut(s)	126, 129, 297, 318
Tsp45I	GTSAC	1 cut(s)	441
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	121
XspI	CTAG	6 cut(s)	69, 122, 143, 345, 377, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.