Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Reverse (-)

4165854 .. 4167617

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTCCGTTGGTGGTGATGGTGGATCGACTTTGCTCATCGGCGGATCTGAGTTGCTGTGGATCAGATCAGATTATGCGGTCTGGCCATGATGGTGGTTATGCAAGCGGTGGTAAAGGCTTCCAAGGTTTCTGTCTGTGCAGCAGTGTTCGCTATGGTGGCAGTGGTGGTCTCGTTGGGGGCGGCAGCTTCTCTGGTGACGGCGGCGGCTTCCAAGAGGGCGACGAGGGCGGAATCATACGGGAGGCTGAGGAGGCGGTGCTCCAACGTTATGGTCCATTTTGGCTGGGCTATGGGTCCTCGGGCCTATGTTTTCGTCGTTTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.19

Weight (kDa)

4.9

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	44, 79, 108, 183, 204, 207, 231, 257
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	3 cut(s)	33, 54, 70
AcoI	YGGCCR	1 cut(s)	85
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	33, 54, 70
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	2 cut(s)	85, 304
ApeKI	GCWGC	2 cut(s)	141, 186
AspS9I	GGNCC	3 cut(s)	275, 297, 304
AsuHPI	GGTGA	2 cut(s)	28, 209
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	275, 297
BalI	TGGCCA	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	153, 198
BccI	CCATC	2 cut(s)	13, 86
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	142, 184, 187, 205, 208
BlsI	GCNGC	5 cut(s)	143, 185, 188, 206, 209
Bme18I	GGWCC	2 cut(s)	275, 297
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	3 cut(s)	275, 297, 304
BmiI	GGNNCC	2 cut(s)	6, 298
Bpu10I	CCTNAGC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	124, 300
BseDI	CCNNGG	2 cut(s)	124, 300
BseMII	CTCAG	2 cut(s)	41, 240
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	153, 198
BseYI	CCCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	87, 306
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	87, 306
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	25, 46, 62, 67
BspACI	CCGC	8 cut(s)	44, 79, 108, 183, 204, 207, 231, 257
BspANI	GGCC	2 cut(s)	87, 306
BspCNI	CTCAG	2 cut(s)	42, 241
BspLI	GGNNCC	2 cut(s)	6, 298
BspPI	GGATC	3 cut(s)	33, 54, 70
BspTNI	GGTCTC	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	124, 300
BssMI	GATC	4 cut(s)	25, 46, 62, 67
BssT1I	CCWWGG	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	50, 249
BstKTI	GATC	4 cut(s)	28, 49, 65, 70
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	25, 46, 62, 67
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 159, 228, 254
BstV1I	GCAGC	2 cut(s)	153, 198
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	2 cut(s)	95, 272
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	87, 306
BtsI	GCAGTG	2 cut(s)	151, 169
BtsIMutI	CAGTG	2 cut(s)	151, 169
Cac8I	GCNNGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	275, 297, 304
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	9 cut(s)	5, 87, 120, 189, 210, 248, 286, 291, 306
CviKI_1	RGCY	9 cut(s)	5, 87, 120, 189, 210, 248, 286, 291, 306
DdeI	CTNAG	2 cut(s)	50, 249
DpnI	GATC	4 cut(s)	27, 48, 64, 69
DpnII	GATC	4 cut(s)	25, 46, 62, 67
EaeI	YGGCCR	1 cut(s)	85
EciI	GGCGGA	2 cut(s)	59, 246
Eco130I	CCWWGG	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	275, 297
Eco88I	CYCGRG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	92
FaiI	YATR	8 cut(s)	77, 90, 102, 156, 239, 273, 294, 310
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	5 cut(s)	142, 184, 187, 205, 208
Fsp4HI	GCNGC	5 cut(s)	142, 184, 187, 205, 208
GluI	GCNGC	5 cut(s)	142, 184, 187, 205, 208
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	87, 306
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	2 cut(s)	28, 209
Hpy188I	TCNGA	3 cut(s)	51, 67, 72
Hpy99I	CGWCG	2 cut(s)	227, 321
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	104, 141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 159, 228, 254
HpyF3I	CTNAG	2 cut(s)	50, 249
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	25, 46, 62, 67
LmnI	GCTCC	2 cut(s)	10, 267
LpnPI	CCDG	3 cut(s)	69, 180, 272
Lsp1109I	GCAGC	2 cut(s)	153, 198
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	4 cut(s)	27, 48, 64, 69
MboI	GATC	4 cut(s)	25, 46, 62, 67
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	1 cut(s)	324
MluNI	TGGCCA	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	211, 220, 238, 244, 247, 310
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	150, 159, 228, 254
NdeII	GATC	4 cut(s)	25, 46, 62, 67
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	6, 298
NmuCI	GTSAC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	5 cut(s)	143, 185, 188, 206, 209
PpuMI	RGGWCCY	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	6, 298
PspPI	GGNCC	3 cut(s)	275, 297, 304
PspPPI	RGGWCCY	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	5 cut(s)	142, 184, 187, 205, 208
Sau3AI	GATC	4 cut(s)	25, 46, 62, 67
Sau96I	GGNCC	3 cut(s)	275, 297, 304
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	3 cut(s)	130, 191, 271
SinI	GGWCC	2 cut(s)	275, 297
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	8 cut(s)	44, 79, 108, 183, 204, 207, 231, 257
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	324
TauI	GCSGC	3 cut(s)	186, 207, 210
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	2 cut(s)	151, 169
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	141, 186
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	151, 169
VpaK11BI	GGWCC	2 cut(s)	275, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.