Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Reverse (-)

9090884 .. 9094491

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGTATTGGTGTAAGACTTGTGGCTTGTGGTGGTGATCGCCGTGTTGATTCTTCAGGTTGGCACTACTGGGATCGCATGGCTCCAAGTGGGGTGATGGTGGATCGGTCTTGCTTGTCGGGGCTGGGGTATTGTGGATCGGATCAGATTCTGCAGTCTGTCCATGATCGTGATTATGTAGACAGTGGTCAAGGTTCCTGTCTGTGCAGCGGTGTTCGTTCTGGTGGCAGTGGTGGTCTAGTTGGGGACGTTCATTTCTATGGTGATGGCGGCAGCTTCCATGAGGAGGACGACGTCGGAATCATACGGGAGGCTAGGTCGGCAGCACGGCGGGCGGAAGCTTTATCGCTTCTCTATCTCCTTGAACAATGGTCTTGGTCTTTCCACATCACTCAAGATCTCGGTCTCTCTCTCAAGTCTCAATCCCTCCTCGACGGCATCGACCCTCTCCTTCCCTCCTCGATGATCGAAGGTCTTTTTAATCCTCGTAAGTCGACAGCTCTAATCGAAAGCAGAGAAATGGAGCAGATTCAAATCAATCTTGGAGAACCAGAAATTGGTCCAGCCTTCCATCCTCAAGAGAGGAACCTACTCAATAAGATGTTTAGCCCTCTGGGTCAATCACGCAATCTCTATTTGCATTTTCTTTTGAATGGTGGCTTGGTTTGCTCATCAATCCTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.86

Weight (kDa)

5.18

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccI	GTMKAC	2 cut(s)	180, 494
AciI	CCGC	4 cut(s)	210, 270, 331, 335
AclWI	GGATC	4 cut(s)	81, 111, 145, 150
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	286, 557
AgsI	TTSAA	3 cut(s)	365, 533, 652
AjuI	GAANNNNNNNTTGG	4 cut(s)	540, 572, 644, 676
AluBI	AGCT	3 cut(s)	276, 341, 500
AluI	AGCT	3 cut(s)	276, 341, 500
Alw26I	GTCTC	2 cut(s)	410, 423
AlwI	GGATC	4 cut(s)	81, 111, 145, 150
AlwNI	CAGNNNCTG	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	207, 273, 323
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	3 cut(s)	47, 106, 275
AvaII	GGWCC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	219, 285, 335
BccI	CCATC	3 cut(s)	91, 260, 579
BceAI	ACGGC	3 cut(s)	27, 344, 451
BcoDI	GTCTC	2 cut(s)	410, 423
BfaI	CTAG	3 cut(s)	239, 315, 680
BfmI	CTRYAG	1 cut(s)	152
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	4 cut(s)	208, 271, 274, 324
BlsI	GCNGC	4 cut(s)	209, 272, 275, 325
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	84, 196, 587
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	186
BpuEI	CTTGAG	3 cut(s)	378, 398, 561
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 557
Bse1I	ACTGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	533
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	2 cut(s)	286, 557
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	3 cut(s)	299, 419, 448
BseXI	GCAGC	3 cut(s)	219, 285, 335
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	286, 557
BsmAI	GTCTC	2 cut(s)	410, 423
BsmFI	GGGAC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	410
Bsp143I	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
BspACI	CCGC	4 cut(s)	210, 270, 331, 335
BspLI	GGNNCC	3 cut(s)	84, 196, 587
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	4 cut(s)	81, 111, 145, 150
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
BssNI	GRCGYC	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	8 cut(s)	40, 76, 106, 140, 145, 169, 400, 468
BstMAI	GTCTC	2 cut(s)	410, 423
BstMBI	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 332, 666
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	219, 285, 335
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	190, 235
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	560
CviAII	CATG	3 cut(s)	79, 164, 281
DpnI	GATC	8 cut(s)	39, 75, 105, 139, 144, 168, 399, 467
DpnII	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
EciI	GGCGGA	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	39
FaeI	CATG	3 cut(s)	82, 167, 284
FaiI	YATR	6 cut(s)	80, 165, 177, 261, 282, 305
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	78, 163, 280
FauI	CCCGC	1 cut(s)	324
FblI	GTMKAC	2 cut(s)	180, 494
Fnu4HI	GCNGC	4 cut(s)	208, 271, 274, 324
FokI	GGATG	1 cut(s)	558
Fsp4HI	GCNGC	4 cut(s)	208, 271, 274, 324
FspBI	CTAG	3 cut(s)	239, 315, 680
GluI	GCNGC	4 cut(s)	208, 271, 274, 324
GsaI	CCCAGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	82, 167, 284
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	4 cut(s)	50, 148, 300, 529
HphI	GGTGA	3 cut(s)	47, 106, 275
Hpy166II	GTNNAC	2 cut(s)	181, 495
Hpy188I	TCNGA	3 cut(s)	142, 147, 299
Hpy188III	TCNNGA	3 cut(s)	170, 395, 578
Hpy8I	GTNNAC	2 cut(s)	181, 495
Hpy99I	CGWCG	3 cut(s)	296, 299, 437
HpyAV	CCTTC	3 cut(s)	461, 464, 577
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	249, 294
HpyCH4V	TGCA	3 cut(s)	154, 207, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 332, 666
HpySE526I	ACGT	2 cut(s)	249, 294
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	82, 167, 284
Kzo9I	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
LmnI	GCTCC	2 cut(s)	88, 523
LpnPI	CCDG	8 cut(s)	42, 55, 110, 207, 211, 564, 576, 599
Lsp1109I	GCAGC	3 cut(s)	219, 285, 335
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	3 cut(s)	239, 315, 680
MaeII	ACGT	2 cut(s)	249, 294
MalI	GATC	8 cut(s)	39, 75, 105, 139, 144, 168, 399, 467
MboI	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
MboII	GAAGA	1 cut(s)	45
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	277
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	168, 258
MspA1I	CMGCKG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	320, 332, 666
NdeII	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
NlaIII	CATG	3 cut(s)	82, 167, 284
NlaIV	GGNNCC	3 cut(s)	84, 196, 587
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	50, 148, 300, 529
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	4 cut(s)	209, 272, 275, 325
PshAI	GACNNNNGTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	84, 196, 587
PspPI	GGNCC	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	293
RseI	CAYNNNNRTG	2 cut(s)	168, 258
SalI	GTCGAC	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	4 cut(s)	208, 271, 274, 324
Sau3AI	GATC	8 cut(s)	37, 73, 103, 137, 142, 166, 397, 465
Sau96I	GGNCC	1 cut(s)	560
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	2 cut(s)	168, 258
SmlI	CTYRAG	3 cut(s)	393, 413, 576
SmoI	CTYRAG	3 cut(s)	393, 413, 576
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	4 cut(s)	210, 270, 331, 335
SspMI	CTAG	3 cut(s)	239, 315, 680
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	252, 297
TaqI	TCGA	6 cut(s)	432, 441, 461, 468, 494, 507
TaqII	GACCGA	2 cut(s)	96, 392
TasI	AATT	1 cut(s)	555
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	4 cut(s)	50, 148, 300, 529
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	2 cut(s)	190, 235
TseI	GCWGC	3 cut(s)	207, 273, 323
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	190, 235
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	560
XmiI	GTMKAC	2 cut(s)	180, 494
XspI	CTAG	3 cut(s)	239, 315, 680
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.