Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Forward (+)

86717521 .. 86718471

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG544600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACATACACCCTACAGTAGTTATTCTCTCTTCTCTGACTCCCTTGCGGGAGGTTTCTCGACTGCGACTTTTTTCAAGGAGTGGAGGTCTTGTGCTTTTGACTGAGAGGAGGGTCCTTTCACCTTTCTCTAGTCTAACTCTTGGAAGTGCCGGCGGGACAACTCGACAGGGCTCCTTGCTCCTAGGCTGCTGCCTAATTCTTCTTGTCACCGGCTATGGTTGCGGTGATGGTGGCTTTGTTCCCGATCTAAGATTGGATCGGTATGTTAATTATGTGGGTTCTCTAGGGAGGATGGATGCAAAGGCGGGTACCAGTGTTCGGCATGCAGCTTGCAACGATGATTGCATCGATCTGATGGTGGTGATGGTGGATATGTCTTGCTTGTCAAGGGACTTGAGTTGTTGGGCATCAAATCTGATTATGCAATCTGTCTTTGATGGTGGTTATGATGGTAGTGGTCAGTGTTCCCATGGGAACTTAGGTGGTGGTGGTCTCTATGAGGGTGGCAGTTTCTATAGAGACGGCGGCGGTTTCCAAGAAGGTGACGGCGACGGCAGAATTGTTGAGGAGGCTAGGGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

20.59

Weight (kDa)

5.29

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	6 cut(s)	49, 156, 225, 308, 528, 531
AclWI	GGATC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	500, 516
AlwI	GGATC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	189, 192, 329
Asp718I	GGTACC	1 cut(s)	311
AspA2I	CCTAGG	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	5 cut(s)	114, 202, 239, 376, 557
AvaII	GGWCC	1 cut(s)	115
AvrII	CCTAGG	1 cut(s)	184
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	176, 179, 341
BccI	CCATC	6 cut(s)	224, 289, 352, 361, 434, 446
BceAI	ACGGC	3 cut(s)	541, 565, 571
BcoDI	GTCTC	2 cut(s)	500, 516
BfaI	CTAG	4 cut(s)	132, 185, 287, 576
BfmI	CTRYAG	2 cut(s)	15, 517
BisI	GCNGC	4 cut(s)	190, 193, 330, 529
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	4 cut(s)	191, 194, 331, 530
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	116, 175, 313
BmsI	GCATC	3 cut(s)	289, 357, 419
BpuEI	CTTGAG	1 cut(s)	418
Bsa29I	ATCGAT	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	184, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 78, 103, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	2 cut(s)	152, 212
Bse1I	ACTGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	184, 472
BseGI	GGATG	2 cut(s)	300, 304
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	124, 584
BseXI	GCAGC	3 cut(s)	176, 179, 341
BshNI	GGYRCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	153, 213
BslFI	GGGAC	2 cut(s)	172, 407
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	500, 516
BsmBI	CGTCTC	1 cut(s)	516
BsmFI	GGGAC	2 cut(s)	172, 407
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	247, 259, 352
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	6 cut(s)	49, 156, 225, 308, 528, 531
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	116, 175, 313
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	500
BsrFI	RCCGGY	2 cut(s)	152, 212
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	2 cut(s)	152, 212
BssECI	CCNNGG	2 cut(s)	184, 472
BssMI	GATC	3 cut(s)	247, 259, 352
BssT1I	CCWWGG	2 cut(s)	184, 472
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	154, 327, 334
BstDEI	CTNAG	3 cut(s)	105, 251, 481
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	2 cut(s)	300, 304
BstKTI	GATC	3 cut(s)	250, 262, 355
BstMAI	GTCTC	2 cut(s)	500, 516
BstMBI	GATC	3 cut(s)	247, 259, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	15, 517
BstV1I	GCAGC	3 cut(s)	176, 179, 341
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	300, 304
BtsIMutI	CAGTG	2 cut(s)	322, 470
Cac8I	GCNNGC	3 cut(s)	154, 327, 334
Cfr10I	RCCGGY	2 cut(s)	152, 212
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	326, 473
CviJI	RGCY	6 cut(s)	174, 189, 216, 237, 332, 575
CviKI_1	RGCY	6 cut(s)	174, 189, 216, 237, 332, 575
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	3 cut(s)	105, 251, 481
DpnI	GATC	3 cut(s)	249, 261, 354
DpnII	GATC	3 cut(s)	247, 259, 352
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	184, 472
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	184, 472
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	184, 472
Esp3I	CGTCTC	1 cut(s)	516
FaeI	CATG	2 cut(s)	329, 476
FaqI	GGGAC	2 cut(s)	172, 407
FatI	CATG	2 cut(s)	325, 472
FauI	CCCGC	3 cut(s)	42, 149, 301
Fnu4HI	GCNGC	4 cut(s)	190, 193, 330, 529
FokI	GGATG	2 cut(s)	307, 311
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	190, 193, 330, 529
FspBI	CTAG	4 cut(s)	132, 185, 287, 576
GluI	GCNGC	4 cut(s)	190, 193, 330, 529
HapII	CCGG	2 cut(s)	153, 213
Hin1II	CATG	2 cut(s)	329, 476
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	153, 213
HphI	GGTGA	5 cut(s)	114, 202, 239, 376, 557
Hpy188I	TCNGA	3 cut(s)	39, 357, 420
Hpy188III	TCNNGA	2 cut(s)	60, 245
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	5 cut(s)	302, 329, 336, 348, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	3 cut(s)	105, 251, 481
Hsp92II	CATG	2 cut(s)	329, 476
KpnI	GGTACC	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	247, 259, 352
LmnI	GCTCC	2 cut(s)	179, 186
LpnPI	CCDG	4 cut(s)	155, 166, 226, 328
Lsp1109I	GCAGC	3 cut(s)	176, 179, 341
LweI	GCATC	3 cut(s)	289, 357, 419
MaeI	CTAG	4 cut(s)	132, 185, 287, 576
MaeIII	GTNAC	2 cut(s)	208, 545
MalI	GATC	3 cut(s)	249, 261, 354
MboI	GATC	3 cut(s)	247, 259, 352
MboII	GAAGA	2 cut(s)	24, 194
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	3 cut(s)	198, 271, 561
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	8 cut(s)	46, 80, 102, 105, 285, 496, 562, 565
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	1 cut(s)	270
MspI	CCGG	2 cut(s)	153, 213
MwoI	GCNNNNNNNGC	1 cut(s)	222
NaeI	GCCGGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	3 cut(s)	247, 259, 352
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	329, 476
NlaIV	GGNNCC	3 cut(s)	116, 175, 313
NmuCI	GTSAC	2 cut(s)	208, 545
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	191, 194, 331, 530
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	116, 175, 313
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	190, 193, 330, 529
Sau3AI	GATC	3 cut(s)	247, 259, 352
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	57, 91, 127, 334, 487, 547
SfaNI	GCATC	3 cut(s)	289, 357, 419
SfcI	CTRYAG	2 cut(s)	15, 517
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	198, 271, 561
SsiI	CCGC	6 cut(s)	49, 156, 225, 308, 528, 531
SspMI	CTAG	4 cut(s)	132, 185, 287, 576
StyI	CCWWGG	2 cut(s)	184, 472
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	61, 166, 351
TasI	AATT	3 cut(s)	198, 271, 561
TauI	GCSGC	1 cut(s)	531
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	322, 470
TseFI	GTSAC	2 cut(s)	208, 545
TseI	GCWGC	3 cut(s)	189, 192, 329
Tsp45I	GTSAC	2 cut(s)	208, 545
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	322, 470
VpaK11BI	GGWCC	1 cut(s)	115
XceI	RCATGY	1 cut(s)	329
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	4 cut(s)	132, 185, 287, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.