Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006968

Physical Location & Seq

Genomic Coordinates Reverse (-)

64456100 .. 64457127

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTAATGGAGCGTAACGCTCTACCGACTCCCAAAAGGGAGGCCTCTCAACTGCGGCCAGTTTCAGGTGGTGGTGGTCTTGTGTTTTTGACTGCGAAGGGGATCTGCTCCCCTTTTTCTAGTCTTCCTCTTGGTGGTGCTGGTGGATTCTGGCGGTACTCCTTGCTCTTAGGCTGTTGCCCATTCCTATTCGTCGCTGGCGCTGGCTGTGGTGATGGTGGTTTTGAGGCCGATCTACAGGTGGATTGGTGCGTTAGAGGTGCGACTTCTCTAGGGAGGTTTGATGCGAGGGCGGGATTCACTGTTTGGCTTACAGATTGTGGCGGGGATGACATTGGTGGTAATCACAGTTTCGATTTTTCGGTTTGGTCTGAATGGGACAGTATAGATCCGATGGAGATGCAATCTGGCTTTCTGATTGATGATGTAGGCAGGGGCTATGCTCGATATGGTTTGATTACCAGCGACCTAGGGGATGGTAGGCTATGTGGCGATGCAGCAAGCGAATGGGATCCTCCGGCTAATAGTAGCTGCATTGCACACGAATTCATTAGATGGGGGACAATTACCCTTGCTTTTGGTGCAGATGCTGGTGGTAAGGACCGCAGCGGCTTGGCTGTTGATAGAAGCGACGCTGGTAGCAATGGCAAAGGAGGTGGAAGTGATGGTGGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

23.36

Weight (kDa)

4.49

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450521 RchiOBHm_Chr5g0016981 RchiOBHm_Chr5g0017131 RchiOBHm_Chr5g0080491
rosa_laevigata	RLG00000008380 RLG00000009306 RLG00000011699 RLG00000014050 RLG00000031887 RLG00000033397 RLG00000034207
rosa_multiflora	Rmu_sc0009984.1_g000012 Rmu_sc0018107.1_g000004 Rmu_sc0020711.1_g000003 Rmu_ssc0000042.1_g000043
rosa_roxburghii	Rroxscaffold_1G00045480 Rroxscaffold_2G00124780 Rroxscaffold_2G00144500 Rroxscaffold_4G00280800 Rroxscaffold_4G00281990 Rroxscaffold_5G00338410
rosa_rugosa	Rorug01G0207900
rosa_samantha	Rh5BG544600 Rh5CG139000 Rh7CG293400
rosa_wichuraiana	Rw5G039350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	55, 154, 293, 324, 604, 609
AclWI	GGATC	4 cut(s)	110, 383, 506, 519
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	65, 134
AluBI	AGCT	1 cut(s)	531
AluI	AGCT	1 cut(s)	531
AlwI	GGATC	4 cut(s)	110, 383, 506, 519
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	3 cut(s)	42, 56, 228
ApeKI	GCWGC	3 cut(s)	497, 531, 606
ApoI	RAATTY	1 cut(s)	545
AspA2I	CCTAGG	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	601
AvrII	CCTAGG	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	509, 518, 618
BccI	CCATC	5 cut(s)	209, 388, 470, 549, 659
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BfaI	CTAG	4 cut(s)	120, 272, 470, 676
BfmI	CTRYAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	5 cut(s)	56, 498, 532, 607, 610
BlnI	CCTAGG	1 cut(s)	469
BlsI	GCNGC	5 cut(s)	57, 499, 533, 608, 611
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	4 cut(s)	274, 390, 484, 577
BpiI	GAAGAC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 134
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	2 cut(s)	534, 649
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	2 cut(s)	334, 481
BseLI	CCNNNNNNNGG	2 cut(s)	65, 134
BseMI	GCAATG	2 cut(s)	534, 649
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	3 cut(s)	509, 518, 618
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	44, 58, 230
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	2 cut(s)	392, 574
BslI	CCNNNNNNNGG	2 cut(s)	65, 134
BsmFI	GGGAC	2 cut(s)	392, 574
BsnI	GGCC	3 cut(s)	44, 58, 230
Bsp143I	GATC	4 cut(s)	102, 232, 388, 511
BspACI	CCGC	6 cut(s)	55, 154, 293, 324, 604, 609
BspANI	GGCC	3 cut(s)	44, 58, 230
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	4 cut(s)	110, 383, 506, 519
BsrDI	GCAATG	2 cut(s)	534, 649
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	4 cut(s)	102, 232, 388, 511
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	3 cut(s)	304, 350, 383
BstC8I	GCNNGC	3 cut(s)	199, 205, 502
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	334, 481
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	4 cut(s)	105, 235, 391, 514
BstMBI	GATC	4 cut(s)	102, 232, 388, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	509, 518, 618
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	3 cut(s)	102, 388, 511
BstYI	RGATCY	3 cut(s)	102, 388, 511
BsuRI	GGCC	3 cut(s)	44, 58, 230
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	334, 481
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	3 cut(s)	199, 205, 502
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	601
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	4 cut(s)	104, 234, 390, 513
DpnII	GATC	4 cut(s)	102, 232, 388, 511
EaeI	YGGCCR	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	469
Eco147I	AGGCCT	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
FaiI	YATR	4 cut(s)	386, 441, 450, 487
FaqI	GGGAC	2 cut(s)	392, 574
FauI	CCCGC	2 cut(s)	286, 317
Fnu4HI	GCNGC	5 cut(s)	56, 498, 532, 607, 610
FokI	GGATG	2 cut(s)	341, 488
Fsp4HI	GCNGC	5 cut(s)	56, 498, 532, 607, 610
FspBI	CTAG	4 cut(s)	120, 272, 470, 676
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	5 cut(s)	56, 498, 532, 607, 610
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	44, 58, 230
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	28, 147, 297
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	373, 393, 417
Hpy99I	CGWCG	2 cut(s)	197, 635
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	3 cut(s)	304, 350, 383
HpyCH4V	TGCA	5 cut(s)	403, 497, 534, 539, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	102, 232, 388, 511
LmnI	GCTCC	2 cut(s)	10, 113
Lsp1109I	GCAGC	3 cut(s)	509, 518, 618
LweI	GCATC	4 cut(s)	274, 390, 484, 577
MaeI	CTAG	4 cut(s)	120, 272, 470, 676
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	4 cut(s)	104, 234, 390, 513
MboI	GATC	4 cut(s)	102, 232, 388, 511
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	3 cut(s)	102, 388, 511
MluCI	AATT	2 cut(s)	545, 564
MlyI	GAGTC	1 cut(s)	22
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	581
NdeII	GATC	4 cut(s)	102, 232, 388, 511
NlaIV	GGNNCC	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	147, 297
PkrI	GCNGC	5 cut(s)	57, 499, 533, 608, 611
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	3 cut(s)	102, 388, 511
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	5 cut(s)	56, 498, 532, 607, 610
Sau3AI	GATC	4 cut(s)	102, 232, 388, 511
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	1 cut(s)	22
SetI	ASST	7 cut(s)	70, 243, 262, 281, 471, 533, 658
SfaNI	GCATC	4 cut(s)	274, 390, 484, 577
SfcI	CTRYAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	601
Sse9I	AATT	2 cut(s)	545, 564
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	6 cut(s)	55, 154, 293, 324, 604, 609
SspMI	CTAG	4 cut(s)	120, 272, 470, 676
StuI	AGGCCT	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	3 cut(s)	304, 350, 383
TaqI	TCGA	2 cut(s)	354, 445
TasI	AATT	2 cut(s)	545, 564
TauI	GCSGC	2 cut(s)	58, 612
TfiI	GAWTC	2 cut(s)	147, 297
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	3 cut(s)	497, 531, 606
TspDTI	ATGAA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	1 cut(s)	545
XmaJI	CCTAGG	1 cut(s)	469
XspI	CTAG	4 cut(s)	120, 272, 470, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.