Rh5CG139000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006968
Physical Location & Seq
Forward (+)
11861185 .. 11864247
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG139000.1

Sequence Viewer

Length: 330 bp
ATGAAAACCCAGAGACCAGGTCTCGAAGGTGGACGACGGCGGCACGGCGGGCGGAAGCTTTATCGCTTCTCTATCTCCTCGAACAATGGTCTTGGTCTCTCCACATCACTCGAGATCTCGGTCTCTCCTCGTCGTCTCTCTCTCAAGTCTCAATCTCTCCTCGACGGCTCCGGCCCTCTCCTTCGCTCCTCAACGATCGAAGGTCTTTTTAATCCTCGTAAGTTGACAGCTCTAATCGAAAGCAGAGAAATGGAGCAGATCCAGTTCAATCCTGGAGGTCTCTCTTTTATCTTTTATCCTTTCTTCTCTTTCAATTCATATATCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.21

Weight (kDa)

10.89

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 40, 48, 52
AclWI GGATC 1 cut(s) 253
AgsI TTSAA 2 cut(s) 268, 313
AjnI CCWGG 2 cut(s) 16, 271
AluBI AGCT 2 cut(s) 58, 230
AluI AGCT 2 cut(s) 58, 230
Alw26I GTCTC 7 cut(s) 7, 26, 101, 127, 140, 153, 284
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 110
BceAI ACGGC 3 cut(s) 53, 61, 181
BciT130I CCWGG 2 cut(s) 18, 273
BcoDI GTCTC 7 cut(s) 7, 26, 101, 127, 140, 153, 284
BglII AGATCT 1 cut(s) 114
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 18, 273
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 18, 273
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 128
BsaI GGTCTC 5 cut(s) 7, 26, 101, 127, 284
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 2 cut(s) 18, 273
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 4 cut(s) 67, 117, 149, 178
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 7 cut(s) 7, 26, 101, 127, 140, 153, 284
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 5 cut(s) 7, 26, 101, 127, 284
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 3 cut(s) 114, 195, 258
BspACI CCGC 3 cut(s) 40, 48, 52
BspANI GGCC 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 1 cut(s) 253
BspTNI GGTCTC 5 cut(s) 7, 26, 101, 127, 284
BsrI ACTGG 1 cut(s) 262
BssMI GATC 3 cut(s) 114, 195, 258
Bst2UI CCWGG 2 cut(s) 18, 273
BstC8I GCNNGC 1 cut(s) 50
BstKTI GATC 3 cut(s) 117, 198, 261
BstMAI GTCTC 7 cut(s) 7, 26, 101, 127, 140, 153, 284
BstMBI GATC 3 cut(s) 114, 195, 258
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 2 cut(s) 18, 273
BstSCI CCNGG 2 cut(s) 16, 271
BstX2I RGATCY 2 cut(s) 114, 258
BstYI RGATCY 2 cut(s) 114, 258
BsuRI GGCC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 16
CviJI RGCY 4 cut(s) 58, 168, 174, 230
CviKI_1 RGCY 4 cut(s) 58, 168, 174, 230
DpnI GATC 3 cut(s) 116, 197, 260
DpnII GATC 3 cut(s) 114, 195, 258
EciI GGCGGA 1 cut(s) 67
Eco31I GGTCTC 5 cut(s) 7, 26, 101, 127, 284
Eco88I CYCGRG 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 16, 271
Esp3I CGTCTC 1 cut(s) 140
FaiI YATR 2 cut(s) 319, 321
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 171
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 56
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 32, 225
Hpy188III TCNNGA 2 cut(s) 23, 112
Hpy8I GTNNAC 2 cut(s) 32, 225
Hpy99I CGWCG 3 cut(s) 39, 135, 167
HpyAV CCTTC 3 cut(s) 20, 191, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 114, 195, 258
LmnI GCTCC 3 cut(s) 173, 191, 253
LpnPI CCDG 7 cut(s) 3, 23, 30, 184, 258, 275, 285
MabI ACCWGGT 1 cut(s) 16
MalI GATC 3 cut(s) 116, 197, 260
MboI GATC 3 cut(s) 114, 195, 258
MboII GAAGA 1 cut(s) 295
MflI RGATCY 2 cut(s) 114, 258
MluCI AATT 1 cut(s) 313
MnlI CCTC 7 cut(s) 88, 138, 170, 186, 199, 225, 269
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 18, 273
MvaI CCWGG 2 cut(s) 18, 273
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 3 cut(s) 114, 195, 258
NlaIV GGNNCC 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 18
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 16, 271
PspGI CCWGG 2 cut(s) 16, 271
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 2 cut(s) 114, 258
PsyI GACNNNGTC 1 cut(s) 18
PvuI CGATCG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 114, 195, 258
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 18, 273
SetI ASST 6 cut(s) 22, 31, 60, 205, 232, 280
SexAI ACCWGGT 1 cut(s) 16
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 110, 143
SmoI CTYRAG 2 cut(s) 110, 143
Sse9I AATT 1 cut(s) 313
SsiI CCGC 3 cut(s) 40, 48, 52
StyD4I CCNGG 2 cut(s) 16, 271
TaqI TCGA 6 cut(s) 24, 80, 111, 162, 198, 237
TaqII GACCGA 1 cut(s) 109
TasI AATT 1 cut(s) 313
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 17, 306
Tth111I GACNNNGTC 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XhoI CTCGAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.