Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

19713598 .. 19716838

Gene Structure 3241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAGCTGTTCTCAGCTCCGCCCGCAATATTTGAGAAGCAGGAATATGGGAAGATGGAAATTGTGGTGGAGCAGAATTCGGGGATTTTCGGGTCCAAGAAAGGTTGGGGTTATGGTGGAGCAGAATTCAAGGATGTAAACCACGCTTCCAAAGGCTCTGTCGAGAAGTTCAGAATGCCAACTTCCCAGAATTTAGTCTCAATTCGGGTCGATTTCGAAGTCAATGGCCAGAGGTTCAAAGACGCCTGCACTTGGAACCCATCTGGTGAAGAGATGAAGTGTGCTAAAGTAACTGTTAGAGACTTGAACCTGTCTTCGAATTACAAGAGAACCATTGTTAATTCCATTCAGGTTTTGGTCGACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAGAGGATGAGCCTGAGGATGATGACATTAATGGATAGTAAGTCGAATTCACGGGGACCAAAGAGGTGCAAGTATGGAGCTAAGACAAATAGACTGCAGTCCCAAGGGTCGTTGCAAATGGAACACTTAGCTTCTTCGGAAGATCTGGTCAGAATCAAGGTATACAATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGCGGTAAAGAAGGAAGCAAGAGAACTGCCCAATCACAATCAACCGCTAAGAGTACGGCAGCTTCCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGGTGTACCACATTTTGGGAATCAATCAGTAACATGTCTTTACCTTTTATATTTCTTCTTAAAGACGAAGTCCCAACTAAGCCAAGATTGCCATCAAGTCCATACCAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

267

Amino Acids

30.04

Weight (kDa)

9.68

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	62 - 145	5.3e-06	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccI	GTMKAC	2 cut(s)	360, 555
AciI	CCGC	4 cut(s)	20, 24, 591, 633
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	4 cut(s)	76, 125, 190, 439
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	643, 696
AfiI	CCNNNNNNNGG	2 cut(s)	252, 704
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	130, 238, 307
AluBI	AGCT	7 cut(s)	7, 17, 473, 524, 581, 650, 662
AluI	AGCT	7 cut(s)	7, 17, 473, 524, 581, 650, 662
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	2 cut(s)	202, 294
AlwI	GGATC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	4 cut(s)	76, 125, 190, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AseI	ATTAAT	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	93, 449
AsuHPI	GGTGA	1 cut(s)	278
AsuII	TTCGAA	2 cut(s)	216, 317
AvaII	GGWCC	2 cut(s)	93, 449
AxyI	CCTNAGG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	664
BarI	GAAGNNNNNNTAC	2 cut(s)	634, 666
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	3 cut(s)	49, 268, 789
BceAI	ACGGC	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	202, 294
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	488
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme18I	GGWCC	2 cut(s)	93, 449
BmgT120I	GGNCC	2 cut(s)	93, 449
BmiI	GGNNCC	3 cut(s)	94, 257, 450
BoxI	GACNNNNGTC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	587
Bpu14I	TTCGAA	2 cut(s)	216, 317
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 704
Bse21I	CCTNAGG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	3 cut(s)	139, 405, 417
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	252, 704
BseMII	CTCAG	2 cut(s)	27, 398
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	664
BslFI	GGGAC	3 cut(s)	462, 478, 745
BslI	CCNNNNNNNGG	2 cut(s)	252, 704
BsmAI	GTCTC	2 cut(s)	202, 294
BsmFI	GGGAC	3 cut(s)	462, 478, 745
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	228
Bsp119I	TTCGAA	2 cut(s)	216, 317
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	373, 535
BspACI	CCGC	4 cut(s)	20, 24, 591, 633
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	26, 399
BspLI	GGNNCC	3 cut(s)	94, 257, 450
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	1 cut(s)	381
BspT104I	TTCGAA	2 cut(s)	216, 317
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	2 cut(s)	373, 535
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	496
Bst1107I	GTATAC	1 cut(s)	556
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	264, 363
BstACI	GRCGYC	1 cut(s)	243
BstBI	TTCGAA	2 cut(s)	216, 317
BstC8I	GCNNGC	3 cut(s)	24, 247, 583
BstDEI	CTNAG	6 cut(s)	13, 407, 474, 520, 636, 767
BstF5I	GGATG	3 cut(s)	139, 405, 417
BstKTI	GATC	2 cut(s)	376, 538
BstMAI	GTCTC	2 cut(s)	202, 294
BstMBI	GATC	2 cut(s)	373, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 777
BstNSI	RCATGY	1 cut(s)	726
BstPAI	GACNNNNGTC	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	139, 405, 417
Cac8I	GCNNGC	3 cut(s)	24, 247, 583
Cfr13I	GGNCC	2 cut(s)	93, 449
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	642, 695
CviAII	CATG	1 cut(s)	723
CviQI	GTAC	2 cut(s)	642, 695
DdeI	CTNAG	6 cut(s)	13, 407, 474, 520, 636, 767
DpnI	GATC	2 cut(s)	375, 537
DpnII	GATC	2 cut(s)	373, 535
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	264, 363
EarI	CTCTTC	2 cut(s)	264, 363
EciI	GGCGGA	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	662
Eco130I	CCWWGG	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	664
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	93, 449
Eco53kI	GAGCTC	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	662
EcoRI	GAATTC	3 cut(s)	76, 125, 439
EcoRV	GATATC	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	726
FaiI	YATR	7 cut(s)	48, 114, 468, 556, 724, 739, 792
FaqI	GGGAC	3 cut(s)	462, 478, 745
FatI	CATG	1 cut(s)	722
FauI	CCCGC	1 cut(s)	31
FblI	GTMKAC	2 cut(s)	360, 555
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	3 cut(s)	146, 412, 424
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	228
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	726
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	2 cut(s)	546, 709
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	4 cut(s)	139, 361, 556, 695
Hpy188I	TCNGA	3 cut(s)	173, 532, 545
Hpy188III	TCNNGA	4 cut(s)	163, 385, 566, 681
Hpy8I	GTNNAC	4 cut(s)	139, 361, 556, 695
HpyAV	CCTTC	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	5 cut(s)	249, 462, 490, 508, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 777
HpyF3I	CTNAG	6 cut(s)	13, 407, 474, 520, 636, 767
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	373, 535
LmnI	GCTCC	5 cut(s)	4, 22, 70, 119, 470
Lsp1109I	GCAGC	1 cut(s)	659
MaeI	CTAG	1 cut(s)	681
MaeIII	GTNAC	2 cut(s)	289, 718
MalI	GATC	2 cut(s)	375, 537
MboI	GATC	2 cut(s)	373, 535
MboII	GAAGA	8 cut(s)	64, 281, 306, 380, 519, 545, 696, 736
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	9 cut(s)	60, 76, 125, 190, 201, 319, 340, 439, 676
MluNI	TGGCCA	1 cut(s)	228
MnlI	CCTC	7 cut(s)	225, 364, 390, 402, 450, 564, 679
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	3 cut(s)	339, 422, 749
Msp20I	TGGCCA	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	23, 777
NdeII	GATC	2 cut(s)	373, 535
NlaIII	CATG	1 cut(s)	726
NlaIV	GGNNCC	3 cut(s)	94, 257, 450
NspI	RCATGY	1 cut(s)	726
NspV	TTCGAA	2 cut(s)	216, 317
PciI	ACATGT	1 cut(s)	722
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	546, 709
PflFI	GACNNNGTC	1 cut(s)	757
PflMI	CCANNNNNTGG	1 cut(s)	704
PkrI	GCNGC	1 cut(s)	649
PscI	ACATGT	1 cut(s)	722
PshAI	GACNNNNGTC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	664
PspN4I	GGNNCC	3 cut(s)	94, 257, 450
PspPI	GGNCC	2 cut(s)	93, 449
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	757
RsaI	GTAC	2 cut(s)	643, 696
RsaNI	GTAC	2 cut(s)	642, 695
SacI	GAGCTC	1 cut(s)	664
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	339, 422, 749
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	2 cut(s)	373, 535
Sau96I	GGNCC	2 cut(s)	93, 449
SduI	GDGCHC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	488
SfuI	TTCGAA	2 cut(s)	216, 317
SinI	GGWCC	2 cut(s)	93, 449
Sse9I	AATT	9 cut(s)	60, 76, 125, 190, 201, 319, 340, 439, 676
SsiI	CCGC	4 cut(s)	20, 24, 591, 633
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	681
SstI	GAGCTC	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	6 cut(s)	162, 210, 216, 317, 360, 437
TasI	AATT	9 cut(s)	60, 76, 125, 190, 201, 319, 340, 439, 676
TfiI	GAWTC	2 cut(s)	546, 709
Tru1I	TTAA	3 cut(s)	339, 422, 749
Tru9I	TTAA	3 cut(s)	339, 422, 749
TseI	GCWGC	1 cut(s)	647
TspDTI	ATGAA	1 cut(s)	290
Tth111I	GACNNNGTC	1 cut(s)	757
Van91I	CCANNNNNTGG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	93, 449
VspI	ATTAAT	1 cut(s)	422
XapI	RAATTY	4 cut(s)	76, 125, 190, 439
XbaI	TCTAGA	1 cut(s)	680
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	2 cut(s)	360, 555
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.