RLG00000018556

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003075
Physical Location & Seq
Forward (+)
31796515 .. 31799816
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018556

Sequence Viewer

Length: 345 bp
ATGGTCAGTGAGATTAAGTTGTTGGCTCAAGCCTTTAGTCAAGCACTCAAGCCTACGTTGTGGAGATGGGGTCTGCTAAACAGGAGGGAACCTAAAAGATCGGCAACCACTCTAGGATCAGACAATGAGGAATCGTGTACAATTTATAGCATTCTGAAGAATGCTGCTTGCAAAACTCTTCTTGTTCTCTTAGCTTACTCTGAATCTGAGTCTTTCAGTTCAGCGTTTGGGCGCAAATGCTATTTTGATTCTTGGACATGGAAATTTGTACACGTATGCGACCTCTTGAAGTTTCTCAGTATAACTATTTATTCTATTGAACTTTGGGATTCCAGGCAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.22

Weight (kDa)

8.72

Isoelectric Point (pI)

66.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 139, 270
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 2 cut(s) 289, 320
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 334
BfaI CTAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 334
BpuEI CTTGAG 2 cut(s) 12, 32
BsaAI YACGTR 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
BseBI CCWGG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 198, 310
BseXI GCAGC 1 cut(s) 151
BsmI GAATGC 2 cut(s) 150, 166
Bsp1407I TGTACA 2 cut(s) 137, 268
Bsp143I GATC 2 cut(s) 98, 116
BspCNI CTCAG 2 cut(s) 199, 309
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 124
BsrGI TGTACA 2 cut(s) 137, 268
BssMI GATC 2 cut(s) 98, 116
Bst2UI CCWGG 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 183
BstAUI TGTACA 2 cut(s) 137, 268
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 190, 207, 296
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 101, 119
BstMBI GATC 2 cut(s) 98, 116
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 138, 269
CviAII CATG 1 cut(s) 258
CviJI RGCY 4 cut(s) 26, 32, 52, 194
CviKI_1 RGCY 4 cut(s) 26, 32, 52, 194
CviQI GTAC 2 cut(s) 138, 269
DdeI CTNAG 3 cut(s) 190, 207, 296
DpnI GATC 2 cut(s) 100, 118
DpnII GATC 2 cut(s) 98, 116
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 261
FaiI YATR 4 cut(s) 147, 259, 277, 302
FatI CATG 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 261
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 5 cut(s) 131, 203, 209, 248, 329
Hpy166II GTNNAC 2 cut(s) 138, 271
Hpy188I TCNGA 4 cut(s) 121, 156, 202, 208
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 138, 271
HpyCH4IV ACGT 2 cut(s) 56, 273
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 3 cut(s) 190, 207, 296
HpySE526I ACGT 2 cut(s) 56, 273
Hsp92II CATG 1 cut(s) 261
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 98, 116
LpnPI CCDG 2 cut(s) 67, 319
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 1 cut(s) 113
MaeII ACGT 2 cut(s) 56, 273
MalI GATC 2 cut(s) 100, 118
MboI GATC 2 cut(s) 98, 116
MboII GAAGA 2 cut(s) 169, 170
MluCI AATT 2 cut(s) 141, 263
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 78, 121, 293
MseI TTAA 2 cut(s) 15, 343
MspR9I CCNGG 1 cut(s) 334
Mva1269I GAATGC 2 cut(s) 150, 166
MvaI CCWGG 1 cut(s) 334
NdeII GATC 2 cut(s) 98, 116
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 90
PctI GAATGC 2 cut(s) 150, 166
PfeI GAWTC 4 cut(s) 131, 203, 248, 329
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 90
RsaI GTAC 2 cut(s) 139, 270
RsaNI GTAC 2 cut(s) 138, 269
SaqAI TTAA 2 cut(s) 15, 343
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 98, 116
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 334
SetI ASST 5 cut(s) 59, 94, 196, 276, 285
SmlI CTYRAG 2 cut(s) 27, 47
SmoI CTYRAG 2 cut(s) 27, 47
Sse9I AATT 2 cut(s) 141, 263
SspI AATATT 1 cut(s) 341
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 332
TaiI ACGT 2 cut(s) 59, 276
TasI AATT 2 cut(s) 141, 263
TatI WGTACW 2 cut(s) 137, 268
TfiI GAWTC 4 cut(s) 131, 203, 248, 329
Tru1I TTAA 2 cut(s) 15, 343
Tru9I TTAA 2 cut(s) 15, 343
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 164
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 263
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.