Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

19578093 .. 19580053

Gene Structure 1961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG196800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGGAGCAGAATTCAAGGATGCCAACTTCCCAGAATTTAGTCCCAATTCGGGTCGATTTCGAATTCAAAGGCCAGAGGTTCAAAGACGCCTTCACTTGGAACCCATCTGGTGAAGAGATGAAGTTTGCTAAAGTAACTGTTAGAGACTTGAACTTGTCTTCGAATTACAAGAGAACCATTGTTAATTCCATTCAGGTTTTGCTCGACAGGGAAGAGAATCAAGGTTTCCAGATATCAAAGAGGATGAGCCTGAGGATGATGACATTAATGGATAGTAAGTCAAATTCACGGGGACCAAAGAGCTTCTTCGGAAGATCTGATACAATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGCGGTAAAGAAGGAAGCAAGAGAACTGCCCAATCACAATCAACCGCTAAGAGTACGGCAGCTTCCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGGTGTACCACATTTTGGGAATCAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

162

Amino Acids

18.96

Weight (kDa)

10.1

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	11 - 70	9.7e-11	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	2 cut(s)	359, 401
AcsI	RAATTY	4 cut(s)	13, 37, 65, 286
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	411, 464
AfiI	CCNNNNNNNGG	3 cut(s)	52, 99, 472
AgsI	TTSAA	4 cut(s)	18, 70, 85, 154
AluBI	AGCT	4 cut(s)	306, 349, 418, 430
AluI	AGCT	4 cut(s)	306, 349, 418, 430
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	4 cut(s)	13, 37, 65, 286
AseI	ATTAAT	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	125
AsuII	TTCGAA	2 cut(s)	63, 164
AvaII	GGWCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	432
BarI	GAAGNNNNNNTAC	4 cut(s)	307, 339, 402, 434
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	104, 297
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	355
Bpu14I	TTCGAA	2 cut(s)	63, 164
BsaHI	GRCGYC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 99, 472
Bse21I	CCTNAGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	27, 252, 264
BseLI	CCNNNNNNNGG	3 cut(s)	52, 99, 472
BseMII	CTCAG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	427
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	29, 309
BslI	CCNNNNNNNGG	3 cut(s)	52, 99, 472
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	29, 309
BsnI	GGCC	1 cut(s)	75
Bsp119I	TTCGAA	2 cut(s)	63, 164
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	317
BspACI	CCGC	2 cut(s)	359, 401
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	104, 297
BspT104I	TTCGAA	2 cut(s)	63, 164
BssMI	GATC	1 cut(s)	317
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	111, 210
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	2 cut(s)	63, 164
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	254, 404
BstF5I	GGATG	3 cut(s)	27, 252, 264
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	27, 252, 264
Cac8I	GCNNGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	410, 463
CviJI	RGCY	6 cut(s)	75, 252, 306, 349, 418, 430
CviKI_1	RGCY	6 cut(s)	75, 252, 306, 349, 418, 430
CviQI	GTAC	2 cut(s)	410, 463
DdeI	CTNAG	2 cut(s)	254, 404
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	111, 210
EarI	CTCTTC	2 cut(s)	111, 210
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	430
Eco81I	CCTNAGG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	2 cut(s)	13, 65
EcoRV	GATATC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	432
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	29, 309
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	3 cut(s)	34, 259, 271
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	2 cut(s)	220, 477
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	2 cut(s)	314, 322
Hpy188III	TCNNGA	3 cut(s)	232, 334, 449
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	103, 361
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	254, 404
Hsp92I	GRCGYC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	8 cut(s)	47, 89, 96, 182, 196, 245, 266, 319
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	6 cut(s)	128, 153, 227, 301, 327, 464
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	8 cut(s)	13, 37, 48, 65, 166, 187, 286, 444
MnlI	CCTC	5 cut(s)	72, 237, 249, 332, 447
MseI	TTAA	2 cut(s)	186, 269
NdeII	GATC	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	104, 297
NspV	TTCGAA	2 cut(s)	63, 164
PfeI	GAWTC	2 cut(s)	220, 477
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	417
PshBI	ATTAAT	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	104, 297
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	2 cut(s)	411, 464
RsaNI	GTAC	2 cut(s)	410, 463
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	186, 269
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	7 cut(s)	83, 201, 229, 308, 351, 420, 432
SfaNI	GCATC	1 cut(s)	12
SfuI	TTCGAA	2 cut(s)	63, 164
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	8 cut(s)	13, 37, 48, 65, 166, 187, 286, 444
SsiI	CCGC	2 cut(s)	359, 401
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	4 cut(s)	57, 63, 164, 207
TasI	AATT	8 cut(s)	13, 37, 48, 65, 166, 187, 286, 444
TfiI	GAWTC	2 cut(s)	220, 477
Tru1I	TTAA	2 cut(s)	186, 269
Tru9I	TTAA	2 cut(s)	186, 269
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	296
VspI	ATTAAT	1 cut(s)	269
XapI	RAATTY	4 cut(s)	13, 37, 65, 286
XbaI	TCTAGA	1 cut(s)	448
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.