Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Reverse (-)

73008081 .. 73009523

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG549900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGAGTTCCCTTAAGGATAATAGTCTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGGATGAGATTAAAGTTCAAGAGAGACGGCCTTTCGATCTTTTGGTGATTATTAACCCAAAGCTTCAAAAGAAGAGCAACAGGACTGCAGTATTCTTTGAAGGCTTCTTAAGATACAATGCTCTAGAGAGGAGAGAAGCTTGCAAGGGCGGTAAAGAAATAAGCAAGAGAGCTGCCCAATCACAATCAACTGCTAAAGGTACAACAGCCTTCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGATGTACCACATTTTGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

128

Amino Acids

14.42

Weight (kDa)

10.28

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	1 - 75	1e-13	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	53, 377
AciI	CCGC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	316, 369
AfiI	CCNNNNNNNGG	3 cut(s)	32, 53, 377
AflII	CTTAAG	2 cut(s)	64, 223
AgsI	TTSAA	3 cut(s)	134, 182, 215
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	178, 254, 287, 335
AluI	AGCT	4 cut(s)	178, 254, 287, 335
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	41, 287
AsuHPI	GGTGA	3 cut(s)	16, 22, 172
BanII	GRGCYC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	28, 274
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	2 cut(s)	239, 354
BfmI	CTRYAG	1 cut(s)	201
BfrI	CTTAAG	2 cut(s)	64, 223
BisI	GCNGC	2 cut(s)	42, 288
BlsI	GCNGC	2 cut(s)	43, 289
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaJI	CCNNGG	2 cut(s)	26, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 53, 377
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	26, 114
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	32, 53, 377
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	28, 274
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	3 cut(s)	32, 53, 377
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	182
BspTI	CTTAAG	2 cut(s)	64, 223
BssECI	CCNNGG	2 cut(s)	26, 114
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	2 cut(s)	64, 223
BstC8I	GCNNGC	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	28, 274
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	315, 368
CviJI	RGCY	8 cut(s)	23, 145, 178, 219, 254, 287, 323, 335
CviKI_1	RGCY	8 cut(s)	23, 145, 178, 219, 254, 287, 323, 335
CviQI	GTAC	2 cut(s)	315, 368
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	133
FaiI	YATR	2 cut(s)	99, 108
Fnu4HI	GCNGC	2 cut(s)	42, 288
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	42, 288
FspBI	CTAG	2 cut(s)	239, 354
GluI	GCNGC	2 cut(s)	42, 288
HaeIII	GGCC	1 cut(s)	145
HindIII	AAGCTT	2 cut(s)	176, 252
HphI	GGTGA	3 cut(s)	16, 22, 172
Hpy188III	TCNNGA	3 cut(s)	134, 239, 354
HpyAV	CCTTC	3 cut(s)	13, 209, 334
HpyCH4V	TGCA	3 cut(s)	110, 203, 258
Kzo9I	GATC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	28, 49
LpnPI	CCDG	3 cut(s)	12, 39, 181
Lsp1109I	GCAGC	2 cut(s)	28, 274
MaeI	CTAG	2 cut(s)	239, 354
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	95, 199, 369
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	349, 382
MnlI	CCTC	3 cut(s)	9, 237, 352
MseI	TTAA	4 cut(s)	65, 126, 168, 224
MspCI	CTTAAG	2 cut(s)	64, 223
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	182
PflMI	CCANNNNNTGG	2 cut(s)	53, 377
PkrI	GCNGC	2 cut(s)	43, 289
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	316, 369
RsaNI	GTAC	2 cut(s)	315, 368
SacI	GAGCTC	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	65, 126, 168, 224
SatI	GCNGC	2 cut(s)	42, 288
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	12, 180, 256, 289, 316, 337
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	64, 223
SmoI	CTYRAG	2 cut(s)	64, 223
Sse9I	AATT	2 cut(s)	349, 382
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	2 cut(s)	239, 354
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	349, 382
Tru1I	TTAA	4 cut(s)	65, 126, 168, 224
Tru9I	TTAA	4 cut(s)	65, 126, 168, 224
TseI	GCWGC	2 cut(s)	41, 287
Van91I	CCANNNNNTGG	2 cut(s)	53, 377
Vha464I	CTTAAG	2 cut(s)	64, 223
XbaI	TCTAGA	2 cut(s)	238, 353
XspI	CTAG	2 cut(s)	239, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.