Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

20356766 .. 20360750

Gene Structure 3985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAAGATGGAGATTGTGGTGGAGCGGAATTTGGGGATTTTCGGGTCCAAGAGAGGTTGGGGATTATGGTGGAGCAAAATTCAAGGATGTAAGCCACGCTTCCAAAGACTCTGTCATGAAGTTCAGAATGCCAACTTCCCAGAATTTAGTCCCAATTCGAGTCGATTTTGAAGTCAAAGGCCAGAGGTTCAAAGACGCCTTCACTTGGAACCCATCTGGTGAAGAGATGAAGTTTGCTAAAGTAACTGTTAGAGACTTGAACCTGTCTTCGAATTACGAGAGAGCCATTGTTAATTCCATTCAGGTTTTGGTCGACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAGAGGATGAGTCTAAGGATGATGACATTAATGGATAGTAAGTCAAATTCACGGGGACCAAAGAGGTGCAAGTATGGAGCTAAGACAAATAGACTGCAGACCCAAGGGTCGTTGCAAATGGAACACTTAGCTTCTTCGGAAGATCTGATACAATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

178

Amino Acids

20.41

Weight (kDa)

9.69

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	47 - 105	1.3e-10	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	27, 532
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	4 cut(s)	30, 80, 145, 394
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	4 cut(s)	85, 173, 193, 262
AluBI	AGCT	3 cut(s)	428, 479, 522
AluI	AGCT	3 cut(s)	428, 479, 522
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	181
ApoI	RAATTY	4 cut(s)	30, 80, 145, 394
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AseI	ATTAAT	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	47, 404
AsuHPI	GGTGA	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	47, 404
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbsI	GAAGAC	1 cut(s)	261
BccI	CCATC	2 cut(s)	3, 223
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	490
Bme18I	GGWCC	2 cut(s)	47, 404
BmgT120I	GGNCC	2 cut(s)	47, 404
BmiI	GGNNCC	3 cut(s)	48, 212, 405
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	3 cut(s)	94, 360, 372
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	137, 417
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	137, 417
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	328, 490
BspACI	CCGC	2 cut(s)	27, 532
BspANI	GGCC	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	48, 212, 405
BspMAI	CTGCAG	1 cut(s)	447
BspPI	GGATC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	2 cut(s)	328, 490
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	219, 318
BstACI	GRCGYC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	362, 429, 475
BstF5I	GGATG	3 cut(s)	94, 360, 372
BstKTI	GATC	2 cut(s)	331, 493
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	328, 490
BstSFI	CTRYAG	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	94, 360, 372
Cac8I	GCNNGC	1 cut(s)	524
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	47, 404
CseI	GACGC	1 cut(s)	206
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	96, 183, 287, 428, 479, 522
CviKI_1	RGCY	6 cut(s)	96, 183, 287, 428, 479, 522
DdeI	CTNAG	3 cut(s)	362, 429, 475
DpnI	GATC	2 cut(s)	330, 492
DpnII	GATC	2 cut(s)	328, 490
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	219, 318
EarI	CTCTTC	2 cut(s)	219, 318
Eco130I	CCWWGG	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	47, 404
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	121
FaiI	YATR	3 cut(s)	69, 119, 423
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	2 cut(s)	137, 417
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	315
FokI	GGATG	3 cut(s)	101, 367, 379
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	3 cut(s)	110, 162, 358
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	128, 487, 495
Hpy188III	TCNNGA	3 cut(s)	118, 340, 507
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	417, 445, 463, 526
HpyF3I	CTNAG	3 cut(s)	362, 429, 475
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	328, 490
LmnI	GCTCC	3 cut(s)	24, 74, 425
LpnPI	CCDG	8 cut(s)	155, 197, 204, 278, 290, 304, 353, 492
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	330, 492
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	2 cut(s)	328, 490
MboII	GAAGA	6 cut(s)	18, 236, 261, 335, 474, 500
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	7 cut(s)	30, 80, 145, 156, 274, 295, 394
MlyI	GAGTC	3 cut(s)	104, 171, 367
MnlI	CCTC	6 cut(s)	49, 180, 319, 345, 405, 505
MseI	TTAA	2 cut(s)	294, 377
Mva1269I	GAATGC	1 cut(s)	135
NdeII	GATC	2 cut(s)	328, 490
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	3 cut(s)	48, 212, 405
NspV	TTCGAA	1 cut(s)	272
PagI	TCATGA	1 cut(s)	117
PctI	GAATGC	1 cut(s)	135
PflFI	GACNNNGTC	1 cut(s)	113
PleI	GAGTC	3 cut(s)	104, 170, 366
PpsI	GAGTC	3 cut(s)	104, 170, 366
PshBI	ATTAAT	1 cut(s)	377
PspN4I	GGNNCC	3 cut(s)	48, 212, 405
PspPI	GGNCC	2 cut(s)	47, 404
PstI	CTGCAG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	490
PsyI	GACNNNGTC	1 cut(s)	113
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	294, 377
Sau3AI	GATC	2 cut(s)	328, 490
Sau96I	GGNCC	2 cut(s)	47, 404
SchI	GAGTC	3 cut(s)	104, 171, 367
SetI	ASST	9 cut(s)	60, 191, 267, 309, 337, 416, 430, 481, 524
SfcI	CTRYAG	1 cut(s)	443
SfuI	TTCGAA	1 cut(s)	272
SinI	GGWCC	2 cut(s)	47, 404
Sse9I	AATT	7 cut(s)	30, 80, 145, 156, 274, 295, 394
SsiI	CCGC	2 cut(s)	27, 532
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	4 cut(s)	160, 165, 272, 315
TasI	AATT	7 cut(s)	30, 80, 145, 156, 274, 295, 394
Tru1I	TTAA	2 cut(s)	294, 377
Tru9I	TTAA	2 cut(s)	294, 377
TspDTI	ATGAA	2 cut(s)	134, 245
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	47, 404
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	4 cut(s)	30, 80, 145, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.