Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

28850586 .. 28853361

Gene Structure 2776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGTTATAGTAGGGGAGTTCATAGGAGGTGCTGCTCTTGGAGCAGCATTTGGGGTATTGTTTGATGTTGTGAATGAAGCAGTTGACAAGCCTACTGCCTTGAAATCCCTCCTTGAGAATATCAAATTTTTGCTACACTTTCTGAAACCATATCTTATGACAGAAATGGAGGAGGGTGTAAAGCTCATCTGCGAGTCATCAAAGGTTAGTAAGTGGAACTGCGTGAAGTTTTACTACACGGATCTACTTATTGAAGTGGACGGATCTCTCAAAAGACTGATAGAAATATTGAGGGTACAAGGAGCAAGAAATACAAAGGAGACCTTGGTTTTGGCACAAAGCAATACTATCCAGCTTATTAAATCAGCAAAGGATGGGAAGGAGAACTTAGTTTTGGCAAGAAAAAATGCTGACCAACTGATTGAATCATCAAGAGATGGGAAGGTGACCTCGGAGTTGGCAAAACAAAATAATGACTTGCTTGTTGAATCTGCAAGAAATGTGAAGGACCCCCTGGTTTTGGCTAAGAAAATTAAAAGGTTACTCAAACGAATTAAACGTCTGGTGCCTTGTAATTGCAAAGAGTCAAAGGCTGCTACTGGGAATTTTAGGCTTGGTGCCATTCTTCGTAAAGGAGAACTAAATGAAATGAGACGCAGGAGATGGAGTATTGTGGTGGAGATGTTCTCAGCTCTGCCCCTGATATTTGAGAAGCAGGAGTATGGGAAGATGGAGATTGTGGTGGAGCGGAATTCGGGGATTTTGGGTCCAAGAGAGGTTGGGGATTATGGTGGAGCAGAATTCAAGGATGTAAGACACGCTTCCAAAGGCTCTGTCGAGAAGTTCAGAATGCCAACTTCCCAGAATTTAGTCCCAATTCAGGTCGATTTCGAAGTCAAAGGCCAAAGGTTCAAAGATGCCTTCACTTGGAACCCATCTGGTGAAGAGATGAAGTTTGCTAAAGTAATTGTTAGAGACTTGAACCTGTCTTCAAATTACGAGAGAGCCATTGTTAATTCCATTCAGGTTTTGGTTGACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAGAGGATGAGTCTGAGGATGATGACAATGATGGATAGTAAGTCAAATTCACGGGGACCCAAGAGGTGCAAGTATGGAGCTAAGACAAATAGACTGCAGTCCCAAGGGTCGTTGCAAATGGAACACTTAGCTTCTTCGGAAGATCTGATACAATATATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGTGGTAAAGAAGGAAGCAAGAGAGCTACCCAATCACAATCAACCGCTAAGAGTACAACAGCTTCCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGGTGTACCACATTTTCGGAATCAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

462

Amino Acids

52.45

Weight (kDa)

9.52

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	52 - 119	9.5e-08	Arabidopsis broad-spectrum mildew resistance protein RPW8
SNF5	PF04855	287 - 345	1.8e-09	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	565, 617
AccBSI	CCGCTC	1 cut(s)	748
AciI	CCGC	2 cut(s)	748, 1298
AclWI	GGATC	3 cut(s)	249, 271, 1056
AcsI	RAATTY	6 cut(s)	125, 604, 751, 800, 865, 1114
AfaI	GTAC	3 cut(s)	297, 1308, 1361
AfiI	CCNNNNNNNGG	3 cut(s)	520, 880, 927
AgsI	TTSAA	8 cut(s)	103, 254, 425, 488, 805, 913, 982, 993
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	9 cut(s)	184, 355, 692, 1148, 1199, 1246, 1279, 1315, 1327
AluI	AGCT	9 cut(s)	184, 355, 692, 1148, 1199, 1246, 1279, 1315, 1327
Alw21I	GWGCWC	1 cut(s)	1329
Alw26I	GTCTC	3 cut(s)	314, 646, 969
AlwI	GGATC	3 cut(s)	249, 271, 1056
AoxI	GGCC	1 cut(s)	901
ApeKI	GCWGC	3 cut(s)	32, 44, 593
ApoI	RAATTY	6 cut(s)	125, 604, 751, 800, 865, 1114
ArsI	GACNNNNNNTTYG	6 cut(s)	313, 345, 544, 576, 819, 851
AspS9I	GGNCC	3 cut(s)	508, 767, 1124
AsuHPI	GGTGA	2 cut(s)	457, 953
AsuII	TTCGAA	1 cut(s)	891
AvaII	GGWCC	3 cut(s)	508, 767, 1124
BanI	GGYRCC	2 cut(s)	565, 617
BanII	GRGCYC	1 cut(s)	1329
BarI	GAAGNNNNNNTAC	6 cut(s)	218, 250, 1200, 1232, 1299, 1331
BbsI	GAAGAC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	1329
BbvI	GCAGC	3 cut(s)	19, 56, 580
BccI	CCATC	6 cut(s)	368, 431, 657, 724, 943, 1093
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	3 cut(s)	314, 646, 969
BfaI	CTAG	1 cut(s)	1346
BfmI	CTRYAG	1 cut(s)	1163
BglII	AGATCT	1 cut(s)	1210
BisI	GCNGC	3 cut(s)	33, 45, 594
BlsI	GCNGC	3 cut(s)	34, 46, 595
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	3 cut(s)	508, 767, 1124
BmgT120I	GGNCC	3 cut(s)	508, 767, 1124
BmiI	GGNNCC	7 cut(s)	510, 567, 619, 768, 932, 1125, 1126
BmrFI	CCNGG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	907
BmuI	ACTGGG	1 cut(s)	609
BoxI	GACNNNNGTC	1 cut(s)	1165
BpiI	GAAGAC	1 cut(s)	981
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpmI	CTGGAG	1 cut(s)	1252
Bpu14I	TTCGAA	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	324, 450, 513, 1171
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 880, 927
Bse1I	ACTGG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	4 cut(s)	324, 450, 513, 1171
BseGI	GGATG	4 cut(s)	379, 814, 1080, 1092
BseLI	CCNNNNNNNGG	3 cut(s)	520, 880, 927
BseMII	CTCAG	2 cut(s)	702, 1073
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	185, 1251
BseXI	GCAGC	3 cut(s)	19, 56, 580
BshFI	GGCC	1 cut(s)	903
BshNI	GGYRCC	2 cut(s)	565, 617
BsiHKAI	GWGCWC	1 cut(s)	1329
BslFI	GGGAC	3 cut(s)	857, 1137, 1153
BslI	CCNNNNNNNGG	3 cut(s)	520, 880, 927
BsmAI	GTCTC	3 cut(s)	314, 646, 969
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	3 cut(s)	857, 1137, 1153
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	1 cut(s)	903
Bso31I	GGTCTC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	891
Bsp1286I	GDGCHC	1 cut(s)	1329
Bsp143I	GATC	4 cut(s)	241, 263, 1048, 1210
BspACI	CCGC	2 cut(s)	748, 1298
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	2 cut(s)	701, 1074
BspLI	GGNNCC	7 cut(s)	510, 567, 619, 768, 932, 1125, 1126
BspMAI	CTGCAG	1 cut(s)	1167
BspPI	GGATC	3 cut(s)	249, 271, 1056
BspT104I	TTCGAA	1 cut(s)	891
BspT107I	GGYRCC	2 cut(s)	565, 617
BspTNI	GGTCTC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	324, 450, 513, 1171
BssMI	GATC	4 cut(s)	241, 263, 1048, 1210
BssT1I	CCWWGG	2 cut(s)	324, 1171
Bst2UI	CCWGG	1 cut(s)	515
Bst6I	CTCTTC	2 cut(s)	939, 1038
BstBI	TTCGAA	1 cut(s)	891
BstC8I	GCNNGC	1 cut(s)	1248
BstDEI	CTNAG	7 cut(s)	388, 525, 688, 1082, 1149, 1195, 1301
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	4 cut(s)	379, 814, 1080, 1092
BstKTI	GATC	4 cut(s)	244, 266, 1051, 1213
BstMAI	GTCTC	3 cut(s)	314, 646, 969
BstMBI	GATC	4 cut(s)	241, 263, 1048, 1210
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	515
BstPAI	GACNNNNGTC	1 cut(s)	1165
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	1163
BstV1I	GCAGC	3 cut(s)	19, 56, 580
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	3 cut(s)	241, 263, 1210
BstYI	RGATCY	3 cut(s)	241, 263, 1210
BsuRI	GGCC	1 cut(s)	903
BtsCI	GGATG	4 cut(s)	379, 814, 1080, 1092
Cac8I	GCNNGC	1 cut(s)	1248
Cfr13I	GGNCC	3 cut(s)	508, 767, 1124
CseI	GACGC	1 cut(s)	663
Csp6I	GTAC	3 cut(s)	296, 1307, 1360
CviQI	GTAC	3 cut(s)	296, 1307, 1360
DdeI	CTNAG	7 cut(s)	388, 525, 688, 1082, 1149, 1195, 1301
DpnI	GATC	4 cut(s)	243, 265, 1050, 1212
DpnII	GATC	4 cut(s)	241, 263, 1048, 1210
Eam1104I	CTCTTC	2 cut(s)	939, 1038
EarI	CTCTTC	2 cut(s)	939, 1038
Ecl136II	GAGCTC	1 cut(s)	1327
Eco130I	CCWWGG	2 cut(s)	324, 1171
Eco24I	GRGCYC	1 cut(s)	1329
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	1065
Eco47I	GGWCC	3 cut(s)	508, 767, 1124
Eco53kI	GAGCTC	1 cut(s)	1327
Eco91I	GGTNACC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	1327
EcoO109I	RGGNCCY	2 cut(s)	508, 1124
EcoO65I	GGTNACC	1 cut(s)	445
EcoRI	GAATTC	2 cut(s)	751, 800
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	1065
EcoT14I	CCWWGG	2 cut(s)	324, 1171
EcoT38I	GRGCYC	1 cut(s)	1329
ErhI	CCWWGG	2 cut(s)	324, 1171
Esp3I	CGTCTC	1 cut(s)	646
FaiI	YATR	9 cut(s)	8, 23, 151, 158, 723, 789, 1143, 1224, 1226
FalI	AAGNNNNNCTT	6 cut(s)	308, 340, 371, 403, 805, 837
FaqI	GGGAC	3 cut(s)	857, 1137, 1153
Fnu4HI	GCNGC	3 cut(s)	33, 45, 594
FokI	GGATG	4 cut(s)	386, 821, 1087, 1099
FriOI	GRGCYC	1 cut(s)	1329
Fsp4HI	GCNGC	3 cut(s)	33, 45, 594
FspBI	CTAG	1 cut(s)	1346
GluI	GCNGC	3 cut(s)	33, 45, 594
GsuI	CTGGAG	1 cut(s)	1252
HaeIII	GGCC	1 cut(s)	903
HgaI	GACGC	1 cut(s)	663
HincII	GTYRAC	2 cut(s)	85, 1036
HindII	GTYRAC	2 cut(s)	85, 1036
HindIII	AAGCTT	1 cut(s)	1244
HinfI	GANTC	6 cut(s)	194, 425, 488, 584, 1078, 1374
HphI	GGTGA	2 cut(s)	457, 953
Hpy166II	GTNNAC	4 cut(s)	85, 259, 1036, 1360
Hpy188I	TCNGA	7 cut(s)	144, 454, 848, 1083, 1207, 1215, 1373
Hpy188III	TCNNGA	5 cut(s)	432, 838, 1060, 1231, 1346
Hpy8I	GTNNAC	4 cut(s)	85, 259, 1036, 1360
HpyAV	CCTTC	5 cut(s)	373, 436, 499, 931, 1258
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	494, 579, 1137, 1165, 1183, 1250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	7 cut(s)	388, 525, 688, 1082, 1149, 1195, 1301
HpySE526I	ACGT	1 cut(s)	559
KflI	GGGWCCC	1 cut(s)	1124
Kzo9I	GATC	4 cut(s)	241, 263, 1048, 1210
LmnI	GCTCC	5 cut(s)	41, 302, 745, 794, 1145
Lsp1109I	GCAGC	3 cut(s)	19, 56, 580
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	1 cut(s)	1346
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	445, 540
MalI	GATC	4 cut(s)	243, 265, 1050, 1212
MbiI	CCGCTC	1 cut(s)	748
MboI	GATC	4 cut(s)	241, 263, 1048, 1210
MboII	GAAGA	8 cut(s)	617, 739, 956, 981, 1055, 1194, 1220, 1361
MflI	RGATCY	3 cut(s)	241, 263, 1210
MhlI	GDGCHC	1 cut(s)	1329
MlyI	GAGTC	3 cut(s)	203, 593, 1087
MseI	TTAA	4 cut(s)	360, 534, 555, 1014
MspR9I	CCNGG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	4 cut(s)	241, 263, 1048, 1210
NlaIV	GGNNCC	7 cut(s)	510, 567, 619, 768, 932, 1125, 1126
NmuCI	GTSAC	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	425, 488, 1374
PkrI	GCNGC	3 cut(s)	34, 46, 595
PleI	GAGTC	3 cut(s)	202, 592, 1086
PpsI	GAGTC	3 cut(s)	202, 592, 1086
PpuMI	RGGWCCY	2 cut(s)	508, 1124
PshAI	GACNNNNGTC	1 cut(s)	1165
Psp124BI	GAGCTC	1 cut(s)	1329
Psp5II	RGGWCCY	2 cut(s)	508, 1124
Psp6I	CCWGG	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	7 cut(s)	510, 567, 619, 768, 932, 1125, 1126
PspPI	GGNCC	3 cut(s)	508, 767, 1124
PspPPI	RGGWCCY	2 cut(s)	508, 1124
PstI	CTGCAG	1 cut(s)	1167
PsuI	RGATCY	3 cut(s)	241, 263, 1210
RsaI	GTAC	3 cut(s)	297, 1308, 1361
RsaNI	GTAC	3 cut(s)	296, 1307, 1360
SacI	GAGCTC	1 cut(s)	1329
SaqAI	TTAA	4 cut(s)	360, 534, 555, 1014
SatI	GCNGC	3 cut(s)	33, 45, 594
Sau3AI	GATC	4 cut(s)	241, 263, 1048, 1210
Sau96I	GGNCC	3 cut(s)	508, 767, 1124
SchI	GAGTC	3 cut(s)	203, 593, 1087
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	1329
SfaNI	GCATC	1 cut(s)	907
SfcI	CTRYAG	1 cut(s)	1163
SfuI	TTCGAA	1 cut(s)	891
SinI	GGWCC	3 cut(s)	508, 767, 1124
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SsiI	CCGC	2 cut(s)	748, 1298
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	1346
SstI	GAGCTC	1 cut(s)	1329
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	2 cut(s)	324, 1171
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	3 cut(s)	837, 885, 891
TatI	WGTACW	1 cut(s)	1306
TfiI	GAWTC	3 cut(s)	425, 488, 1374
Tru1I	TTAA	4 cut(s)	360, 534, 555, 1014
Tru9I	TTAA	4 cut(s)	360, 534, 555, 1014
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	32, 44, 593
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	4 cut(s)	10, 90, 660, 965
TspGWI	ACGGA	2 cut(s)	254, 276
VpaK11BI	GGWCC	3 cut(s)	508, 767, 1124
XapI	RAATTY	6 cut(s)	125, 604, 751, 800, 865, 1114
XbaI	TCTAGA	1 cut(s)	1345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1027
XspI	CTAG	1 cut(s)	1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.