Rorug03G0319600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003075
Physical Location & Seq
Forward (+)
34531767 .. 34532081
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0319600.1

Sequence Viewer

Length: 315 bp
ATGCGTTGCCCTATTAGCTGCGAAGGCCGGCCTTCAAGAGCGAGACTCGTGTGCCAATCCCCCGACGGCGTTGTCTCTCCACTTCCCGAAGTAGAGGAGGAGCGTTGTGACTTGACCCGAATGATTATGCGCTCCAATTTGGGAGCATTGAAACCTCAAGGGAAGGCCGGCCTCCAGCGTTGGTTGGTGGCGGTGGGCAGTATGGCTCTCCTGGGCAAGCTAGAAGGGCTGGAAGTTTTGAATGAGGGGGGTCGGACCCGACCACGCAGAGGCCGTCTAAAAGTTTCTGAAGATCGGCGGAGATGGCTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

10.06

Isoelectric Point (pI)

79.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AciI CCGC 2 cut(s) 191, 298
AcuI CTGAAG 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 36, 151, 241
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 18, 220
AluI AGCT 2 cut(s) 18, 220
Alw26I GTCTC 2 cut(s) 37, 79
AoxI GGCC 5 cut(s) 25, 29, 165, 169, 271
ApeKI GCWGC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 255
AvaII GGWCC 1 cut(s) 255
BauI CACGAG 1 cut(s) 47
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 297
BceAI ACGGC 2 cut(s) 82, 258
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 37, 79
BfaI CTAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 2 cut(s) 27, 167
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 110, 113
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 5 cut(s) 27, 31, 167, 171, 273
BsiSI CCGG 2 cut(s) 28, 168
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 37, 79
BsnI GGCC 5 cut(s) 27, 31, 167, 171, 273
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 2 cut(s) 191, 298
BspANI GGCC 5 cut(s) 27, 31, 167, 171, 273
BspLI GGNNCC 1 cut(s) 257
BsrFI RCCGGY 2 cut(s) 27, 167
BssAI RCCGGY 2 cut(s) 27, 167
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 29, 169, 218
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 37, 79
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 15, 24, 226, 304
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 5
BsuRI GGCC 5 cut(s) 27, 31, 167, 171, 273
Cac8I GCNNGC 3 cut(s) 29, 169, 218
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 2 cut(s) 27, 167
Cfr13I GGNCC 1 cut(s) 255
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 210
FaiI YATR 2 cut(s) 128, 203
Fnu4HI GCNGC 1 cut(s) 19
FseI GGCCGGCC 2 cut(s) 31, 171
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 5 cut(s) 27, 31, 167, 171, 273
HapII CCGG 2 cut(s) 28, 168
HhaI GCGC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HinfI GANTC 1 cut(s) 45
HpaII CCGG 2 cut(s) 28, 168
Hpy188I TCNGA 2 cut(s) 255, 289
Hpy188III TCNNGA 2 cut(s) 36, 86
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 17, 42, 157, 218
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 24, 226, 304
HspAI GCGC 1 cut(s) 130
KroI GCCGGC 2 cut(s) 27, 167
KroNI GCCGGC 2 cut(s) 29, 169
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 3 cut(s) 100, 137, 143
LpnPI CCDG 7 cut(s) 41, 181, 188, 197, 215, 224, 293
Lsp1109I GCAGC 1 cut(s) 5
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 1 cut(s) 302
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 6 cut(s) 88, 91, 165, 182, 238, 263
MroNI GCCGGC 2 cut(s) 27, 167
MspI CCGG 2 cut(s) 28, 168
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 4 cut(s) 15, 24, 226, 304
NaeI GCCGGC 2 cut(s) 29, 169
NdeII GATC 1 cut(s) 292
NgoMIV GCCGGC 2 cut(s) 27, 167
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PdiI GCCGGC 2 cut(s) 29, 169
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 255
RigI GGCCGGCC 2 cut(s) 31, 171
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 212
SetI ASST 3 cut(s) 20, 157, 222
SinI GGWCC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 136
SsiI CCGC 2 cut(s) 191, 298
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 210
TasI AATT 1 cut(s) 136
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 255
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.