No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061 |
| rosa_laevigata | RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045 |
| rosa_multiflora | Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150 |
| rosa_rugosa | Rorug03G0319600 |
| rosa_samantha | Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400 |
| rosa_wichuraiana | Rw3G027200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 3 |
| AciI | CCGC | 1 cut(s) | 209 |
| AclI | AACGTT | 1 cut(s) | 283 |
| AgsI | TTSAA | 2 cut(s) | 280, 362 |
| AluBI | AGCT | 1 cut(s) | 227 |
| AluI | AGCT | 1 cut(s) | 227 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 355 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 284 |
| AspLEI | GCGC | 2 cut(s) | 124, 136 |
| AspS9I | GGNCC | 1 cut(s) | 371 |
| AvaII | GGWCC | 1 cut(s) | 371 |
| AxyI | CCTNAGG | 1 cut(s) | 308 |
| BfaI | CTAG | 3 cut(s) | 213, 228, 299 |
| BfuAI | ACCTGC | 1 cut(s) | 3 |
| BglII | AGATCT | 1 cut(s) | 34 |
| BisI | GCNGC | 1 cut(s) | 210 |
| BlsI | GCNGC | 1 cut(s) | 211 |
| Bme18I | GGWCC | 1 cut(s) | 371 |
| BmgT120I | GGNCC | 1 cut(s) | 371 |
| BmiI | GGNNCC | 1 cut(s) | 112 |
| Bpu10I | CCTNAGC | 1 cut(s) | 118 |
| Bse21I | CCTNAGG | 1 cut(s) | 308 |
| BseGI | GGATG | 1 cut(s) | 303 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspACI | CCGC | 1 cut(s) | 209 |
| BspLI | GGNNCC | 1 cut(s) | 112 |
| BspMI | ACCTGC | 1 cut(s) | 3 |
| BssMI | GATC | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 1 cut(s) | 103 |
| Bst6I | CTCTTC | 1 cut(s) | 321 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 3 cut(s) | 47, 118, 308 |
| BstF5I | GGATG | 1 cut(s) | 303 |
| BstHHI | GCGC | 2 cut(s) | 124, 136 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 119 |
| BstX2I | RGATCY | 1 cut(s) | 34 |
| BstYI | RGATCY | 1 cut(s) | 34 |
| Bsu36I | CCTNAGG | 1 cut(s) | 308 |
| BtsCI | GGATG | 1 cut(s) | 303 |
| BveI | ACCTGC | 1 cut(s) | 3 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| CfoI | GCGC | 2 cut(s) | 124, 136 |
| Cfr13I | GGNCC | 1 cut(s) | 371 |
| CviJI | RGCY | 5 cut(s) | 113, 212, 227, 252, 357 |
| CviKI_1 | RGCY | 5 cut(s) | 113, 212, 227, 252, 357 |
| DdeI | CTNAG | 3 cut(s) | 47, 118, 308 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| Eam1104I | CTCTTC | 1 cut(s) | 321 |
| EarI | CTCTTC | 1 cut(s) | 321 |
| Eco47I | GGWCC | 1 cut(s) | 371 |
| Eco81I | CCTNAGG | 1 cut(s) | 308 |
| FaiI | YATR | 2 cut(s) | 290, 324 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 12, 44 |
| Fnu4HI | GCNGC | 1 cut(s) | 210 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 1 cut(s) | 210 |
| FspBI | CTAG | 3 cut(s) | 213, 228, 299 |
| GlaI | GCGC | 2 cut(s) | 123, 135 |
| GluI | GCNGC | 1 cut(s) | 210 |
| HhaI | GCGC | 2 cut(s) | 124, 136 |
| Hin6I | GCGC | 2 cut(s) | 122, 134 |
| HinP1I | GCGC | 2 cut(s) | 122, 134 |
| HinfI | GANTC | 1 cut(s) | 23 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 66, 383 |
| Hpy188III | TCNNGA | 1 cut(s) | 299 |
| HpyAV | CCTTC | 1 cut(s) | 368 |
| HpyCH4III | ACNGT | 1 cut(s) | 103 |
| HpyCH4IV | ACGT | 1 cut(s) | 283 |
| HpyCH4V | TGCA | 2 cut(s) | 12, 333 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 119 |
| HpyF3I | CTNAG | 3 cut(s) | 47, 118, 308 |
| HpySE526I | ACGT | 1 cut(s) | 283 |
| HspAI | GCGC | 2 cut(s) | 122, 134 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LmnI | GCTCC | 1 cut(s) | 110 |
| LpnPI | CCDG | 1 cut(s) | 266 |
| MaeI | CTAG | 3 cut(s) | 213, 228, 299 |
| MaeII | ACGT | 1 cut(s) | 283 |
| MaeIII | GTNAC | 1 cut(s) | 24 |
| MalI | GATC | 1 cut(s) | 36 |
| MboI | GATC | 1 cut(s) | 34 |
| MboII | GAAGA | 2 cut(s) | 228, 338 |
| MfeI | CAATTG | 1 cut(s) | 58 |
| MflI | RGATCY | 1 cut(s) | 34 |
| MluCI | AATT | 3 cut(s) | 58, 128, 375 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MroXI | GAANNNNTTC | 1 cut(s) | 284 |
| MseI | TTAA | 2 cut(s) | 74, 191 |
| MunI | CAATTG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 119 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIV | GGNNCC | 1 cut(s) | 112 |
| NmuCI | GTSAC | 1 cut(s) | 24 |
| PdmI | GAANNNNTTC | 1 cut(s) | 284 |
| PkrI | GCNGC | 1 cut(s) | 211 |
| PleI | GAGTC | 1 cut(s) | 31 |
| PpsI | GAGTC | 1 cut(s) | 31 |
| Psp1406I | AACGTT | 1 cut(s) | 283 |
| PspN4I | GGNNCC | 1 cut(s) | 112 |
| PspPI | GGNCC | 1 cut(s) | 371 |
| PsuI | RGATCY | 1 cut(s) | 34 |
| SaqAI | TTAA | 2 cut(s) | 74, 191 |
| SatI | GCNGC | 1 cut(s) | 210 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| Sau96I | GGNCC | 1 cut(s) | 371 |
| SchI | GAGTC | 1 cut(s) | 32 |
| SetI | ASST | 5 cut(s) | 17, 119, 191, 229, 286 |
| SinI | GGWCC | 1 cut(s) | 371 |
| Sse9I | AATT | 3 cut(s) | 58, 128, 375 |
| SsiI | CCGC | 1 cut(s) | 209 |
| SspMI | CTAG | 3 cut(s) | 213, 228, 299 |
| TaaI | ACNGT | 1 cut(s) | 103 |
| TaiI | ACGT | 1 cut(s) | 286 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TasI | AATT | 3 cut(s) | 58, 128, 375 |
| TauI | GCSGC | 1 cut(s) | 212 |
| Tru1I | TTAA | 2 cut(s) | 74, 191 |
| Tru9I | TTAA | 2 cut(s) | 74, 191 |
| TseFI | GTSAC | 1 cut(s) | 24 |
| Tsp45I | GTSAC | 1 cut(s) | 24 |
| TspDTI | ATGAA | 3 cut(s) | 182, 277, 339 |
| VpaK11BI | GGWCC | 1 cut(s) | 371 |
| XbaI | TCTAGA | 1 cut(s) | 298 |
| XmnI | GAANNNNTTC | 1 cut(s) | 284 |
| XspI | CTAG | 3 cut(s) | 213, 228, 299 |