Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

30561578 .. 30594786

Gene Structure 33209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAACGTGGATTTTCTTCCGAAGAGTAACACTTTGCTTGGCCGCATTTCTCTATCAAGTCCAAATTTTCTAGTTGATTCTAAGCTTGGAGGCAAAGTCTACTTGCTGCCTACATCCATTGATCTAAACTTCGGTTCCATTGGTTCCACCGGTGCCGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATAATGAACGTGAATACCTTCCCCGTAGTAATGACTTGAGGCAACCAACACATACCGCATACCCCATTTCCAAAACGTCATTAGCCCGCCGTTATGTCGATGCCCTTTCTCAACAATACAATGCTCTAGAGAGGAGAGAAGCTTGCAAGGGCGGTAAAGAAATAAGCAAGAGAGCTGCCCAATCACAATCAACTGCTAAAGGTCCAACAGCCTTCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGATGTACCACATTTTGGGAATCAGTTAGTAACATGTCTTTACCTTTTATATTTCTTCCTAAGGATGAAGTCCCAACTAAGCCAAGATTGCCATCAAGTCCATGCCAAAAGCCTGAAATCAGTAATGCCACCACCGATTCCAATTAAAGATGAGCGGGAGAAGCAAGAAAGCATCAATTTATGGAAATGCACTAAAAAGTCAACCTTAGCACATTTTTCTACTCCGGCTAGGAGAAAGCGAGGTAGACAAGAAATGAGGGGTGGCAGCCTGATCAAACGAACTCTAAATAAGTTGAAATTTTCCAGATCCATTTTAGACATGCTAAGGATCATATCTTATGAAGAGTTCAAGGGCTATTTTGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH EB1

Protein Analysis

271

Amino Acids

30.68

Weight (kDa)

9.93

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccBSI	CCGCTC	1 cut(s)	601
AccI	GTMKAC	3 cut(s)	99, 192, 691
AciI	CCGC	5 cut(s)	43, 252, 283, 348, 601
AclWI	GGATC	3 cut(s)	169, 747, 782
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	64, 743
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	479
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	742, 796, 809
AluBI	AGCT	5 cut(s)	85, 176, 338, 371, 419
AluI	AGCT	5 cut(s)	85, 176, 338, 371, 419
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	3 cut(s)	169, 747, 782
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	106, 371, 711
ApoI	RAATTY	2 cut(s)	64, 743
AsiGI	ACCGGT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	3 cut(s)	93, 358, 723
BccI	CCATC	2 cut(s)	152, 546
BceAI	ACGGC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	717
BfaI	CTAG	5 cut(s)	71, 173, 323, 438, 675
BisI	GCNGC	4 cut(s)	43, 107, 372, 712
BlsI	GCNGC	4 cut(s)	44, 108, 373, 713
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	3 cut(s)	136, 145, 154
BmsI	GCATC	2 cut(s)	286, 627
Bpu10I	CCTNAGC	2 cut(s)	652, 770
BpuEI	CTTGAG	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	168
BseGI	GGATG	2 cut(s)	113, 516
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	3 cut(s)	93, 358, 723
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	152
BshTI	ACCGGT	1 cut(s)	149
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	150, 671
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
BspACI	CCGC	5 cut(s)	43, 252, 283, 348, 601
BspANI	GGCC	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	136, 145, 154
BspPI	GGATC	3 cut(s)	169, 747, 782
BspT107I	GGYRCC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
Bst6I	CTCTTC	2 cut(s)	17, 783
BstC8I	GCNNGC	2 cut(s)	283, 340
BstDEI	CTNAG	5 cut(s)	81, 506, 524, 652, 770
BstF5I	GGATG	2 cut(s)	113, 516
BstKTI	GATC	6 cut(s)	124, 164, 172, 720, 755, 777
BstMBI	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 607
BstNSI	RCATGY	2 cut(s)	483, 769
BstV1I	GCAGC	3 cut(s)	93, 358, 723
BstX2I	RGATCY	2 cut(s)	161, 752
BstYI	RGATCY	2 cut(s)	161, 752
Bsu15I	ATCGAT	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	113, 516
Cac8I	GCNNGC	2 cut(s)	283, 340
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	452
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	3 cut(s)	480, 548, 766
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	5 cut(s)	81, 506, 524, 652, 770
DpnI	GATC	6 cut(s)	123, 163, 171, 719, 754, 776
DpnII	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	17, 783
EarI	CTCTTC	2 cut(s)	17, 783
Ecl136II	GAGCTC	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	3 cut(s)	483, 551, 769
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	3 cut(s)	479, 547, 765
FauI	CCCGC	2 cut(s)	290, 594
FbaI	TGATCA	1 cut(s)	717
FblI	GTMKAC	3 cut(s)	99, 192, 691
Fnu4HI	GCNGC	4 cut(s)	43, 107, 372, 712
FokI	GGATG	2 cut(s)	100, 523
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	4 cut(s)	43, 107, 372, 712
FspBI	CTAG	5 cut(s)	71, 173, 323, 438, 675
GluI	GCNGC	4 cut(s)	43, 107, 372, 712
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	150, 671
Hin1II	CATG	3 cut(s)	483, 551, 769
HincII	GTYRAC	2 cut(s)	193, 648
HindII	GTYRAC	2 cut(s)	193, 648
HindIII	AAGCTT	2 cut(s)	83, 336
HinfI	GANTC	3 cut(s)	77, 466, 583
HpaII	CCGG	2 cut(s)	150, 671
Hpy166II	GTNNAC	4 cut(s)	100, 193, 648, 692
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	323, 438, 750
Hpy8I	GTNNAC	4 cut(s)	100, 193, 648, 692
HpyAV	CCTTC	2 cut(s)	224, 418
HpyCH4IV	ACGT	3 cut(s)	6, 205, 272
HpyCH4V	TGCA	2 cut(s)	342, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 607
HpyF3I	CTNAG	5 cut(s)	81, 506, 524, 652, 770
HpySE526I	ACGT	3 cut(s)	6, 205, 272
Hsp92II	CATG	3 cut(s)	483, 551, 769
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
LpnPI	CCDG	5 cut(s)	163, 572, 684, 728, 763
Lsp1109I	GCAGC	3 cut(s)	93, 358, 723
LweI	GCATC	2 cut(s)	286, 627
MaeI	CTAG	5 cut(s)	71, 173, 323, 438, 675
MaeII	ACGT	3 cut(s)	6, 205, 272
MaeIII	GTNAC	2 cut(s)	26, 475
MalI	GATC	6 cut(s)	123, 163, 171, 719, 754, 776
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
MboII	GAAGA	5 cut(s)	8, 34, 453, 493, 800
MflI	RGATCY	2 cut(s)	161, 752
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	5 cut(s)	64, 433, 588, 622, 743
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	83, 228, 321, 436, 680, 696
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	591
MspI	CCGG	2 cut(s)	150, 671
MwoI	GCNNNNNNNGC	2 cut(s)	534, 607
NdeII	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
NlaIII	CATG	3 cut(s)	483, 551, 769
NlaIV	GGNNCC	3 cut(s)	136, 145, 154
NspI	RCATGY	2 cut(s)	483, 769
PciI	ACATGT	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	77, 466, 583
PflMI	CCANNNNNTGG	1 cut(s)	461
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	44, 108, 373, 713
PscI	ACATGT	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	136, 145, 154
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	161, 752
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	4 cut(s)	43, 107, 372, 712
Sau3AI	GATC	6 cut(s)	121, 161, 169, 717, 752, 774
Sau96I	GGNCC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	2 cut(s)	286, 627
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	5 cut(s)	64, 433, 588, 622, 743
SsiI	CCGC	5 cut(s)	43, 252, 283, 348, 601
SspMI	CTAG	5 cut(s)	71, 173, 323, 438, 675
SstI	GAGCTC	1 cut(s)	421
TaiI	ACGT	3 cut(s)	9, 208, 275
TaqI	TCGA	3 cut(s)	168, 192, 294
TasI	AATT	5 cut(s)	64, 433, 588, 622, 743
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	3 cut(s)	77, 466, 583
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseI	GCWGC	3 cut(s)	106, 371, 711
TspDTI	ATGAA	4 cut(s)	17, 216, 527, 801
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	2 cut(s)	64, 743
XbaI	TCTAGA	2 cut(s)	322, 437
XceI	RCATGY	2 cut(s)	483, 769
XmiI	GTMKAC	3 cut(s)	99, 192, 691
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	5 cut(s)	71, 173, 323, 438, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.