Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

38388510 .. 38389703

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAATACCAATATGCCAGCAATACCCGAAGCAATATCTTCACAAAGCGATACAATGCTCTAGAGAGGAGAGAAGCTTGCAAGGGCGGTAAAGAAATAAGCAAGAGAGCTGCCCAATCACAATCAACTGCTAAGGGTACAACAACCTTCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGATGTACCACATTTTGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH EB1

Protein Analysis

69

Amino Acids

7.88

Weight (kDa)

10.43

Isoelectric Point (pI)

81.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AciI	CCGC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	139, 192
AfiI	CCNNNNNNNGG	1 cut(s)	200
AluBI	AGCT	3 cut(s)	77, 110, 158
AluI	AGCT	3 cut(s)	77, 110, 158
Alw21I	GWGCWC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	62, 177
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	19, 79
BstDEI	CTNAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	19, 79
Csp6I	GTAC	2 cut(s)	138, 191
CviJI	RGCY	3 cut(s)	77, 110, 158
CviKI_1	RGCY	3 cut(s)	77, 110, 158
CviQI	GTAC	2 cut(s)	138, 191
DdeI	CTNAG	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	160
FaiI	YATR	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	62, 177
GluI	GCNGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	62, 177
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	132
LpnPI	CCDG	1 cut(s)	31
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	62, 177
MboII	GAAGA	2 cut(s)	31, 192
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	172, 205
MnlI	CCTC	2 cut(s)	60, 175
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	160
RsaI	GTAC	2 cut(s)	139, 192
RsaNI	GTAC	2 cut(s)	138, 191
SacI	GAGCTC	1 cut(s)	160
SatI	GCNGC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	4 cut(s)	79, 112, 149, 160
SgeI	CNNG	7 cut(s)	30, 39, 74, 90, 94, 115, 189
Sse9I	AATT	2 cut(s)	172, 205
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	2 cut(s)	62, 177
SstI	GAGCTC	1 cut(s)	160
TasI	AATT	2 cut(s)	172, 205
TseI	GCWGC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	200
XbaI	TCTAGA	2 cut(s)	61, 176
XspI	CTAG	2 cut(s)	62, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.