Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

56841151 .. 56842270

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTCTCAGCTCCGCCCCCGATATTTGAGAAGCAGGAGTATGGGAAGATGGGGATTGTGGTGGAGCGGAATTCGGGGATTTTTGGGTCTAAGAGAGGTTGGGGATTATGGTGGAGCAGAATTCAAGGATTCCTAATTCGGGTCGATTTGGAAGTCAAAGGCCAGAGGGTCAAAGACGCCTTCACTTGGAACCCATCTGGTGAAGAGACGCAGTTTGCTAAAGTAACTGTTAGAGACTTGAACTTGTCTTCGAATTACGAGAGAGCCATTGTTAATTCCATTCAGGTTTTGGTCGACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAACGGATGAGTCTTAGGATGATGACATTGATGGATAGTAAGTCCAATTCACGGGGACCAAAGAGGTGCAAGTATGGAGCTATGACAAATAGACTGCAGTCCCAAGGGTCGTTGCAAATGGAACACTTAGCTTCTTTGGAAGATCTGGTCAGTAATCAAGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

165

Amino Acids

18.7

Weight (kDa)

9.51

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF5	PF04855	46 - 96	2.2e-07	SNF5 / SMARCB1 / INI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	14, 67
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	70, 120
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	139, 186, 378
AgsI	TTSAA	2 cut(s)	125, 241
AluBI	AGCT	3 cut(s)	11, 407, 458
AluI	AGCT	3 cut(s)	11, 407, 458
Alw26I	GTCTC	2 cut(s)	200, 228
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	70, 120
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	240
BccI	CCATC	3 cut(s)	43, 202, 352
BcoDI	GTCTC	2 cut(s)	200, 228
BfmI	CTRYAG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	191, 384
BoxI	GACNNNNGTC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 186, 378
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	339, 351
BseLI	CCNNNNNNNGG	3 cut(s)	139, 186, 378
BseMII	CTCAG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	396, 412
BslI	CCNNNNNNNGG	3 cut(s)	139, 186, 378
BsmAI	GTCTC	2 cut(s)	200, 228
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	396, 412
BsnI	GGCC	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	307, 469
BspACI	CCGC	2 cut(s)	14, 67
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	191, 384
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	307, 469
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	198, 297
BstACI	GRCGYC	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	251
BstDEI	CTNAG	4 cut(s)	7, 90, 341, 454
BstF5I	GGATG	2 cut(s)	339, 351
BstKTI	GATC	2 cut(s)	310, 472
BstMAI	GTCTC	2 cut(s)	200, 228
BstMBI	GATC	2 cut(s)	307, 469
BstPAI	GACNNNNGTC	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	339, 351
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	2 cut(s)	185, 217
CviJI	RGCY	5 cut(s)	11, 162, 266, 407, 458
CviKI_1	RGCY	5 cut(s)	11, 162, 266, 407, 458
DdeI	CTNAG	4 cut(s)	7, 90, 341, 454
DpnI	GATC	2 cut(s)	309, 471
DpnII	GATC	2 cut(s)	307, 469
Eam1104I	CTCTTC	2 cut(s)	198, 297
EarI	CTCTTC	2 cut(s)	198, 297
Eco130I	CCWWGG	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	383
EcoRI	GAATTC	2 cut(s)	70, 120
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	200
FaiI	YATR	4 cut(s)	42, 109, 402, 410
FaqI	GGGAC	2 cut(s)	396, 412
FblI	GTMKAC	1 cut(s)	294
FokI	GGATG	2 cut(s)	346, 358
HaeIII	GGCC	1 cut(s)	162
HgaI	GACGC	2 cut(s)	185, 217
Hin1I	GRCGYC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	129, 337
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	396, 424, 442
HpyF3I	CTNAG	4 cut(s)	7, 90, 341, 454
Hsp92I	GRCGYC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	307, 469
LmnI	GCTCC	4 cut(s)	16, 64, 114, 404
LpnPI	CCDG	7 cut(s)	20, 176, 183, 269, 283, 332, 458
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	309, 471
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	307, 469
MboII	GAAGA	5 cut(s)	58, 215, 240, 314, 479
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	6 cut(s)	70, 120, 135, 253, 274, 373
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	4 cut(s)	89, 159, 298, 384
MseI	TTAA	1 cut(s)	273
NdeII	GATC	2 cut(s)	307, 469
NlaIV	GGNNCC	2 cut(s)	191, 384
NspV	TTCGAA	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PshAI	GACNNNNGTC	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	191, 384
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	469
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	307, 469
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	346
SetI	ASST	8 cut(s)	13, 100, 288, 316, 395, 409, 460, 490
SfcI	CTRYAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	1 cut(s)	383
Sse9I	AATT	6 cut(s)	70, 120, 135, 253, 274, 373
SsiI	CCGC	2 cut(s)	14, 67
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	3 cut(s)	144, 251, 294
TasI	AATT	6 cut(s)	70, 120, 135, 253, 274, 373
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	70, 120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.