Rroxscaffold_2G00112330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003075
Physical Location & Seq
Reverse (-)
37392269 .. 37399547
7279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112330.1

Sequence Viewer

Length: 447 bp
ATGCTCTGGAAAGGAGAGAAGCTTGCAAGGGTGGTAAAGAAGGAAGCAAGAGAGCTGCCCAATCATAATCAACCGCTAAGAATCCTATCCCTCTCGAGGCATTTACTCTTCGGTGAGAAGGACGATTTATATCGTATAGAAGTTCCAATGGTTTGCATGTCTGTCGCCCTCCTCGAGGTCGTTCTTCCTCTCTGTTCAACCTATGGGTTGTGGTATTCGCTCCATGTTGAATTGCCTTTCGAGTCCGGTCCGGGCTTGAAAATCTCTCGTCGGAGGAGGCTTTTCTTAGATCCGGGTTTGAGTGGGGCGATTCGCATTTGGGACCCCGGACCTGTCTCTTCTCTTTTCGGGGCGAAAAGAGTTGCCCGATGGTTCCCGAGACGGAGGAGGACGGCGGCCGAAGGCTTTCATCGTTGGCGGGAGGTTGGATCAGATCCGGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.03

Weight (kDa)

10.16

Isoelectric Point (pI)

71.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 173
AciI CCGC 3 cut(s) 74, 395, 418
AclWI GGATC 3 cut(s) 284, 428, 436
AcoI YGGCCR 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 96, 175
AgsI TTSAA 3 cut(s) 198, 230, 259
AluBI AGCT 2 cut(s) 22, 55
AluI AGCT 2 cut(s) 22, 55
Alw26I GTCTC 2 cut(s) 340, 373
AlwI GGATC 3 cut(s) 284, 428, 436
Ama87I CYCGRG 3 cut(s) 94, 173, 376
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 248, 322, 329
AsuC2I CCSGG 3 cut(s) 252, 294, 327
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 3 cut(s) 94, 173, 376
AvaII GGWCC 3 cut(s) 248, 322, 329
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 363
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcnI CCSGG 3 cut(s) 252, 294, 327
BcoDI GTCTC 2 cut(s) 340, 373
BfaI CTAG 1 cut(s) 445
BisI GCNGC 2 cut(s) 56, 396
BlsI GCNGC 2 cut(s) 57, 397
Bme1390I CCNGG 3 cut(s) 252, 294, 327
Bme18I GGWCC 3 cut(s) 248, 322, 329
BmeT110I CYCGRG 3 cut(s) 94, 173, 376
BmgT120I GGNCC 3 cut(s) 248, 322, 329
BmiI GGNNCC 3 cut(s) 323, 324, 374
BmrFI CCNGG 3 cut(s) 252, 294, 327
BpuMI CCSGG 3 cut(s) 252, 294, 327
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 325
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 175
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 325
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 96, 175
BseRI GAGGAG 3 cut(s) 161, 289, 400
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 399
BsiHKCI CYCGRG 3 cut(s) 94, 173, 376
BsiSI CCGG 5 cut(s) 246, 251, 293, 327, 437
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 96, 175
BsmAI GTCTC 2 cut(s) 340, 373
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 398
BsoBI CYCGRG 3 cut(s) 94, 173, 376
Bsp143I GATC 3 cut(s) 289, 428, 433
BspACI CCGC 3 cut(s) 74, 395, 418
BspANI GGCC 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 323, 324, 374
BspPI GGATC 3 cut(s) 284, 428, 436
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 3 cut(s) 289, 428, 433
Bst6I CTCTTC 2 cut(s) 113, 343
BstC8I GCNNGC 2 cut(s) 24, 442
BstDEI CTNAG 2 cut(s) 77, 286
BstENI CCTNNNNNAGG 1 cut(s) 173
BstKTI GATC 3 cut(s) 292, 431, 436
BstMAI GTCTC 2 cut(s) 340, 373
BstMBI GATC 3 cut(s) 289, 428, 433
BstMCI CGRYCG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 250, 292, 325
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 289, 433
BstYI RGATCY 2 cut(s) 289, 433
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 1 cut(s) 398
Cac8I GCNNGC 2 cut(s) 24, 442
Cfr13I GGNCC 3 cut(s) 248, 322, 329
CpoI CGGWCCG 1 cut(s) 248
CspI CGGWCCG 1 cut(s) 248
CviAII CATG 2 cut(s) 157, 224
CviJI RGCY 7 cut(s) 22, 55, 255, 280, 398, 405, 440
CviKI_1 RGCY 7 cut(s) 22, 55, 255, 280, 398, 405, 440
DdeI CTNAG 2 cut(s) 77, 286
DpnI GATC 3 cut(s) 291, 430, 435
DpnII GATC 3 cut(s) 289, 428, 433
EaeI YGGCCR 1 cut(s) 396
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 113, 343
EarI CTCTTC 2 cut(s) 113, 343
EclXI CGGCCG 1 cut(s) 396
Eco47I GGWCC 3 cut(s) 248, 322, 329
Eco52I CGGCCG 1 cut(s) 396
Eco88I CYCGRG 3 cut(s) 94, 173, 376
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 2 cut(s) 160, 227
FaiI YATR 6 cut(s) 66, 130, 137, 158, 204, 225
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 156, 223
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 2 cut(s) 56, 396
Fsp4HI GCNGC 2 cut(s) 56, 396
FspBI CTAG 1 cut(s) 445
GluI GCNGC 2 cut(s) 56, 396
HaeIII GGCC 1 cut(s) 398
HapII CCGG 5 cut(s) 246, 251, 293, 327, 437
Hin1II CATG 2 cut(s) 160, 227
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 81, 242, 310
HpaII CCGG 5 cut(s) 246, 251, 293, 327, 437
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 273, 433
Hpy188III TCNNGA 3 cut(s) 7, 94, 376
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 3 cut(s) 34, 112, 395
HpyCH4V TGCA 2 cut(s) 26, 156
HpyF3I CTNAG 2 cut(s) 77, 286
Hsp92II CATG 2 cut(s) 160, 227
KflI GGGWCCC 1 cut(s) 322
Kzo9I GATC 3 cut(s) 289, 428, 433
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 259, 264, 306, 340, 345
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 445
MalI GATC 3 cut(s) 291, 430, 435
MboI GATC 3 cut(s) 289, 428, 433
MboII GAAGA 3 cut(s) 100, 176, 330
MflI RGATCY 2 cut(s) 289, 433
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 251, 406
MroXI GAANNNNTTC 1 cut(s) 405
MspI CCGG 5 cut(s) 246, 251, 293, 327, 437
MspR9I CCNGG 3 cut(s) 252, 294, 327
NciI CCSGG 3 cut(s) 252, 294, 327
NdeII GATC 3 cut(s) 289, 428, 433
NlaIII CATG 2 cut(s) 160, 227
NlaIV GGNNCC 3 cut(s) 323, 324, 374
NspI RCATGY 1 cut(s) 160
PaeR7I CTCGAG 2 cut(s) 94, 173
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 81, 310
PkrI GCNGC 2 cut(s) 57, 397
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 323, 324, 374
PspPI GGNCC 3 cut(s) 248, 322, 329
PspPPI RGGWCCY 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 173
PsuI RGATCY 2 cut(s) 289, 433
Rsr2I CGGWCCG 1 cut(s) 248
RsrII CGGWCCG 1 cut(s) 248
SatI GCNGC 2 cut(s) 56, 396
Sau3AI GATC 3 cut(s) 289, 428, 433
Sau96I GGNCC 3 cut(s) 248, 322, 329
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 3 cut(s) 252, 294, 327
SetI ASST 6 cut(s) 24, 57, 180, 203, 334, 426
Sfr274I CTCGAG 2 cut(s) 94, 173
SinI GGWCC 3 cut(s) 248, 322, 329
SlaI CTCGAG 2 cut(s) 94, 173
SmlI CTYRAG 2 cut(s) 94, 173
SmoI CTYRAG 2 cut(s) 94, 173
Sse9I AATT 1 cut(s) 230
SsiI CCGC 3 cut(s) 74, 395, 418
SspMI CTAG 1 cut(s) 445
StyD4I CCNGG 3 cut(s) 250, 292, 325
TaqI TCGA 3 cut(s) 95, 174, 240
TasI AATT 1 cut(s) 230
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 2 cut(s) 81, 310
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 398
TspGWI ACGGA 1 cut(s) 397
VpaK11BI GGWCC 3 cut(s) 248, 322, 329
XagI CCTNNNNNAGG 1 cut(s) 173
XceI RCATGY 1 cut(s) 160
XhoI CTCGAG 2 cut(s) 94, 173
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.