Rh3BG348400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003075
Physical Location & Seq
Reverse (-)
38377092 .. 38414143
37052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG348400.1

Sequence Viewer

Length: 342 bp
ATGGAGGACACCGGTGAATACATTGCTCCGTGCACTGATCACTCGGTGATGTGCTTGGTGGATGGGCTGCTGAAGATTTGGGTGTCCTCAGCGAGATGCGCGATAGAGAAGGATACCTGTGAGGGTCACTTGGAGGCGAAAAAGTTGCTGGTGGGGTATGGACTGACTATAAAGTTGGTCATTGCAGATTTTGCTCAACGGGGAAGAGGATCAAGATTTCAAGATATCAAAGAGGATGAGTCTGAGGATGATGACATCGATGTTCACTCTTGTTGGGACTCTCTAGAAGAGACATACAAATCCTTTGTCAGATTAAGAAAGGAGCAGAGTTTTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.88

Weight (kDa)

4.61

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 92
AdeI CACNNNGTG 1 cut(s) 46
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 221, 335
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 284
Alw44I GTGCAC 1 cut(s) 31
AlwI GGATC 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 26, 58
BaeGI GKGCMC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciVI GTATCC 1 cut(s) 106
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 284
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmsI GCATC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 11
Bse3DI GCAATG 2 cut(s) 21, 180
BseCI ATCGAT 1 cut(s) 258
BseGI GGATG 3 cut(s) 67, 241, 253
BseMI GCAATG 2 cut(s) 21, 180
BseMII CTCAG 2 cut(s) 102, 234
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 37, 209
BspCNI CTCAG 2 cut(s) 101, 235
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 1 cut(s) 101
BspPI GGATC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 21, 180
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 2 cut(s) 37, 209
Bst6I CTCTTC 2 cut(s) 199, 282
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 88, 243
BstF5I GGATG 3 cut(s) 67, 241, 253
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 40, 212
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 37, 209
BstMWI GCNNNNNNNGC 2 cut(s) 98, 191
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 258
BsuI GTATCC 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 3 cut(s) 67, 241, 253
BtsIMutI CAGTG 1 cut(s) 33
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 258
CspAI ACCGGT 1 cut(s) 11
CviJI RGCY 1 cut(s) 67
CviKI_1 RGCY 1 cut(s) 67
DdeI CTNAG 2 cut(s) 88, 243
DpnI GATC 2 cut(s) 39, 211
DpnII GATC 2 cut(s) 37, 209
DraIII CACNNNGTG 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 199, 282
EarI CTCTTC 2 cut(s) 199, 282
Eco32I GATATC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 226
FaiI YATR 3 cut(s) 159, 170, 295
FaqI GGGAC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 3 cut(s) 74, 248, 260
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 68
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 239, 278
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 26, 58
Hpy166II GTNNAC 2 cut(s) 33, 265
Hpy188I TCNGA 2 cut(s) 244, 311
Hpy188III TCNNGA 3 cut(s) 213, 221, 284
Hpy8I GTNNAC 2 cut(s) 33, 265
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 33, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 191
HpyF3I CTNAG 2 cut(s) 88, 243
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 37, 209
LmnI GCTCC 2 cut(s) 31, 322
LpnPI CCDG 3 cut(s) 25, 130, 134
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 86
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 39, 211
MboI GATC 2 cut(s) 37, 209
MboII GAAGA 3 cut(s) 85, 216, 299
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 2 cut(s) 248, 272
MnlI CCTC 6 cut(s) 97, 115, 127, 200, 226, 238
MseI TTAA 1 cut(s) 314
MspI CCGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 98, 191
NdeII GATC 2 cut(s) 37, 209
NmuCI GTSAC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 247, 272
PpsI GAGTC 2 cut(s) 247, 272
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 2 cut(s) 37, 209
SchI GAGTC 2 cut(s) 248, 272
SduI GDGCHC 1 cut(s) 35
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 86
SgrAI CRCCGGYG 1 cut(s) 11
SspMI CTAG 1 cut(s) 284
TaqI TCGA 1 cut(s) 258
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 18
TspRI CASTG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 283
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.