Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Forward (+)

38271442 .. 38276696

Gene Structure 5255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCCCAATTCGGTCCTAATACCGGACAACAAAATATTTACAAGATAATATTAAGGTTTGGTCAACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAGAGGATGAGTCTGAGGATGATGACATTGATGTGTTTCAGGTGCTAAGCATGGAGGCCGTGGTGATAGCCGTCAAGAACTTGTCAAAATTCATCTCCGTCAAGCCCGATGGCAGCTGGGTTTTTGAGAGCATCACTAAGCGCAAAGCAGACCGGCATCCTGATCCTCCTATCTTGAAAAGCAAAAGGAGCTGCTTTACCAGAAGGATATTTGTCTTACAAAGTAATACTTTCCAATCCAAAAGTTTTAGACTCGATATTAATCTTGATGCTAATTTCCACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NERD

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

9.16

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	85, 254
AcsI	RAATTY	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	2 cut(s)	213, 288
AluI	AGCT	2 cut(s)	213, 288
AlwI	GGATC	2 cut(s)	85, 254
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	210, 288
ApoI	RAATTY	1 cut(s)	185
AseI	ATTAAT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	222, 275
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	140, 152
BisI	GCNGC	2 cut(s)	211, 289
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	2 cut(s)	212, 290
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmsI	GCATC	3 cut(s)	237, 262, 355
Bpu1102I	GCTNAGC	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	3 cut(s)	109, 121, 253
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	222, 275
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	24, 250
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	77, 259
Bsp1720I	GCTNAGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	85, 254
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	77, 259
Bst6I	CTCTTC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	111, 143, 234
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	109, 121, 253
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	80, 262
BstMBI	GATC	2 cut(s)	77, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	222, 275
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	109, 121, 253
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	5 cut(s)	155, 167, 202, 213, 288
CviKI_1	RGCY	5 cut(s)	155, 167, 202, 213, 288
DdeI	CTNAG	3 cut(s)	111, 143, 234
DpnI	GATC	2 cut(s)	79, 261
DpnII	GATC	2 cut(s)	77, 259
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	211, 289
FokI	GGATG	3 cut(s)	116, 128, 240
Fsp4HI	GCNGC	2 cut(s)	211, 289
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	211, 289
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	24, 250
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	107, 348
HpaII	CCGG	2 cut(s)	24, 250
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	5 cut(s)	89, 172, 257, 271, 362
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	3 cut(s)	111, 143, 234
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	77, 259
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	8 cut(s)	37, 53, 102, 122, 199, 263, 270, 310
Lsp1109I	GCAGC	2 cut(s)	222, 275
LweI	GCATC	3 cut(s)	237, 262, 355
MalI	GATC	2 cut(s)	79, 261
MboI	GATC	2 cut(s)	77, 259
MboII	GAAGA	1 cut(s)	84
MfeI	CAATTG	1 cut(s)	379
MluCI	AATT	4 cut(s)	8, 185, 370, 379
MlyI	GAGTC	2 cut(s)	116, 342
MnlI	CCTC	5 cut(s)	68, 94, 106, 145, 273
MseI	TTAA	2 cut(s)	53, 357
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	2 cut(s)	24, 250
MunI	CAATTG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	2 cut(s)	77, 259
NlaIII	CATG	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	212, 290
PleI	GAGTC	2 cut(s)	115, 342
PpsI	GAGTC	2 cut(s)	115, 342
PshBI	ATTAAT	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	53, 357
SatI	GCNGC	2 cut(s)	211, 289
Sau3AI	GATC	2 cut(s)	77, 259
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	116, 342
SetI	ASST	5 cut(s)	59, 86, 141, 215, 290
SfaNI	GCATC	3 cut(s)	237, 262, 355
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	8, 185, 370, 379
SspI	AATATT	2 cut(s)	37, 51
TaqI	TCGA	1 cut(s)	351
TasI	AATT	4 cut(s)	8, 185, 370, 379
Tru1I	TTAA	2 cut(s)	53, 357
Tru9I	TTAA	2 cut(s)	53, 357
TseI	GCWGC	2 cut(s)	210, 288
TspDTI	ATGAA	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.