Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003075

Physical Location & Seq

Genomic Coordinates Reverse (-)

65487396 .. 65488203

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG472000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGAGTTCCCTTAAGGATAATAGTCTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGGATGAGATTAAAGTTCAAGAGAGACGGCCTTTCGATCTTTTGGTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

55

Amino Acids

6.2

Weight (kDa)

8.93

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	1 - 37	3.5e-09	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003075)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163901 RchiOBHm_Chr4g0386381 RchiOBHm_Chr5g0025761 RchiOBHm_Chr6g0278061
rosa_laevigata	RLG00000004168 RLG00000013261 RLG00000018556 RLG00000034045
rosa_multiflora	Rmu_sc0005580.1_g000006 Rmu_sc0005879.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106940 Rroxscaffold_2G00112330 Rroxscaffold_3G00218660 Rroxscaffold_3G00241480 Rroxscaffold_4G00322650 Rroxscaffold_5G00342530 Rroxscaffold_6G00388140 Rroxscaffold_6G00388150
rosa_rugosa	Rorug03G0319600
rosa_samantha	Rh2AG389600 Rh2CG222000 Rh2CG376800 Rh2CG549900 Rh3BG348400 Rh4DG151500 Rh5AG180300 Rh5AG508200 Rh5BG295200 Rh5CG196800 Rh5DG178700 Rh5DG305000 Rh5DG357400 Rh6AG172600 Rh7AG471900 Rh7AG472000 Rh7DG351500 Rh7DG450400
rosa_wichuraiana	Rw3G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	32, 53
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	16, 22
BbvI	GCAGC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	133
BfrI	CTTAAG	1 cut(s)	64
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaJI	CCNNGG	2 cut(s)	26, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 53
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	26, 114
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	32, 53
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	32, 53
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	26, 114
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	124
CviJI	RGCY	2 cut(s)	23, 145
CviKI_1	RGCY	2 cut(s)	23, 145
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	133
FaiI	YATR	3 cut(s)	99, 108, 163
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	145
HphI	GGTGA	2 cut(s)	16, 22
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	28, 49
LpnPI	CCDG	2 cut(s)	12, 39
Lsp1109I	GCAGC	1 cut(s)	28
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	95
MnlI	CCTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	65, 126, 166
MspCI	CTTAAG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	65, 126, 166
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	1 cut(s)	12
SgeI	CNNG	6 cut(s)	38, 39, 50, 91, 127, 146
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	65, 126, 166
Tru9I	TTAA	3 cut(s)	65, 126, 166
TseI	GCWGC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.