Rh5DG178700

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003075
Physical Location & Seq
Forward (+)
19758604 .. 19764688
6085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG178700.1

Sequence Viewer

Length: 273 bp
ATGGGTTTTGGTCGACAGGGAAGAGGATCAAGGTTTCCAGATATCAAAGAGGATGAGCCTGAGGATGATGACATTAATGTACTAGTTAAGTTCTATGATTTCAAAGATTCAGGGAGGGATAGTAAGTCGAATTCACGGGGACCAAAGAGGTGCAAGTATGGAGCTAAGACAAATAGACTGCAGTCCCAAGGGTCGTTGCAAATGGAACACTTAGCTTCTTCGGAAGATCTGATACAATGCTCTGGAGAGGAGAGAAGCTTGCAAGGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

90

Amino Acids

10.17

Weight (kDa)

6.57

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 13
AciI CCGC 1 cut(s) 268
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 82
AluBI AGCT 3 cut(s) 164, 215, 258
AluI AGCT 3 cut(s) 164, 215, 258
AlwI GGATC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 130
AseI ATTAAT 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 140
AvaII GGWCC 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 179
BglII AGATCT 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 141
BoxI GACNNNNGTC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse21I CCTNAGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 58, 70
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 263
BslFI GGGAC 2 cut(s) 153, 169
BsmFI GGGAC 2 cut(s) 153, 169
Bsp143I GATC 2 cut(s) 26, 226
BspACI CCGC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 26, 226
BssT1I CCWWGG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 3 cut(s) 60, 165, 211
BstF5I GGATG 2 cut(s) 58, 70
BstKTI GATC 2 cut(s) 29, 229
BstMBI GATC 2 cut(s) 26, 226
BstPAI GACNNNNGTC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 58, 70
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 4 cut(s) 58, 164, 215, 258
CviKI_1 RGCY 4 cut(s) 58, 164, 215, 258
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 3 cut(s) 60, 165, 211
DpnI GATC 2 cut(s) 28, 228
DpnII GATC 2 cut(s) 26, 226
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 187
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 130
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaiI YATR 2 cut(s) 96, 159
FaqI GGGAC 2 cut(s) 153, 169
FblI GTMKAC 1 cut(s) 13
FokI GGATG 2 cut(s) 65, 77
FspBI CTAG 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 264
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 223, 231
Hpy188III TCNNGA 2 cut(s) 38, 243
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4V TGCA 4 cut(s) 153, 181, 199, 262
HpyF3I CTNAG 3 cut(s) 60, 165, 211
Kzo9I GATC 2 cut(s) 26, 226
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 2, 51, 72, 96, 228
MaeI CTAG 1 cut(s) 83
MalI GATC 2 cut(s) 28, 228
MboI GATC 2 cut(s) 26, 226
MboII GAAGA 3 cut(s) 33, 210, 236
MflI RGATCY 1 cut(s) 226
MluCI AATT 1 cut(s) 130
MnlI CCTC 6 cut(s) 17, 43, 55, 108, 141, 241
MseI TTAA 2 cut(s) 75, 87
NdeII GATC 2 cut(s) 26, 226
NlaIV GGNNCC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 140
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SalI GTCGAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 75, 87
Sau3AI GATC 2 cut(s) 26, 226
Sau96I GGNCC 1 cut(s) 140
SetI ASST 5 cut(s) 35, 152, 166, 217, 260
SfcI CTRYAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 82
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 187
TaqI TCGA 2 cut(s) 13, 128
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 75, 87
Tru9I TTAA 2 cut(s) 75, 87
VpaK11BI GGWCC 1 cut(s) 140
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.