RLG00000034045

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003075
Physical Location & Seq
Reverse (-)
35800859 .. 35801455
597 bp
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UTR
Exon/CDS
Intron
RLM00000034045

Sequence Viewer

Length: 402 bp
ATGGAACACTTAGCTTCTTCGGAAGATCTGATTAGAATGGATGAAATGGTAGTGCTGCAGTCTGCACTTTTATCAAGTATAAGAAGAGTTCCTTTGTTGCTGCCTATTTCTTTCCTTTTTCTGTTTTCTTTAAGATACAATGCTCTGGAGAGGAGGGAAGCTTGCAAGGGCGGTAAAGAAGGAAGCAAGAGAGCTGCCCAATCACAATCAACCGCTAAGAGTACAGTAGCTTCCCAAAGAGCTCATTCCTCTCACAATTCTAGAAGAAATGGTGTACCACATTTTGGGAATCAATCAGTAACATGTCTTTACCTTTTATATTTCTTCTTAAGGATGATTGCCATCAAGTCCATACCAAAGCCTGAAATCAGTAATGCCACCACTGATTCCAACAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

134

Amino Acids

14.93

Weight (kDa)

10.17

Isoelectric Point (pI)

68.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AciI CCGC 2 cut(s) 171, 213
AfaI GTAC 2 cut(s) 223, 276
AfiI CCNNNNNNNGG 1 cut(s) 284
AflII CTTAAG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 302
AluBI AGCT 5 cut(s) 14, 161, 194, 230, 242
AluI AGCT 5 cut(s) 14, 161, 194, 230, 242
Alw21I GWGCWC 1 cut(s) 244
ApeKI GCWGC 3 cut(s) 55, 100, 194
BanII GRGCYC 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 42, 87, 181
BccI CCATC 1 cut(s) 350
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 328
BglII AGATCT 1 cut(s) 25
BisI GCNGC 3 cut(s) 56, 101, 195
BlsI GCNGC 3 cut(s) 57, 102, 196
BpmI CTGGAG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 341
BseGI GGATG 2 cut(s) 46, 339
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 3 cut(s) 42, 87, 181
BsgI GTGCAG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 171, 213
BspMAI CTGCAG 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 328
BssMI GATC 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 79
BstAFI CTTAAG 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 10, 216
BstF5I GGATG 2 cut(s) 46, 339
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 42, 87, 181
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsCI GGATG 2 cut(s) 46, 339
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 222, 275
CviAII CATG 1 cut(s) 303
CviJI RGCY 6 cut(s) 14, 161, 194, 230, 242, 361
CviKI_1 RGCY 6 cut(s) 14, 161, 194, 230, 242, 361
CviQI GTAC 2 cut(s) 222, 275
DdeI CTNAG 2 cut(s) 10, 216
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 1 cut(s) 306
FaiI YATR 4 cut(s) 80, 304, 319, 353
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 1 cut(s) 302
Fnu4HI GCNGC 3 cut(s) 56, 101, 195
FokI GGATG 2 cut(s) 53, 346
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 3 cut(s) 56, 101, 195
FspBI CTAG 1 cut(s) 261
GluI GCNGC 3 cut(s) 56, 101, 195
GsuI CTGGAG 1 cut(s) 167
Hin1II CATG 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 289, 386
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 22, 30
Hpy188III TCNNGA 2 cut(s) 146, 261
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 58, 65, 165
HpyF3I CTNAG 2 cut(s) 10, 216
Hsp92II CATG 1 cut(s) 306
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 131, 375
Lsp1109I GCAGC 3 cut(s) 42, 87, 181
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 5 cut(s) 9, 35, 96, 276, 316
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 256
MnlI CCTC 3 cut(s) 144, 147, 259
MseI TTAA 2 cut(s) 131, 329
MspCI CTTAAG 1 cut(s) 328
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 306
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PfeI GAWTC 2 cut(s) 289, 386
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 3 cut(s) 57, 102, 196
PscI ACATGT 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 223, 276
RsaNI GTAC 2 cut(s) 222, 275
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 131, 329
SatI GCNGC 3 cut(s) 56, 101, 195
Sau3AI GATC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 16, 163, 196, 232, 244, 315
SfcI CTRYAG 1 cut(s) 56
SgeI CNNG 9 cut(s) 87, 158, 174, 178, 199, 273, 315, 358, 374
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 171, 213
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 244
TaaI ACNGT 1 cut(s) 226
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 2 cut(s) 289, 386
Tru1I TTAA 2 cut(s) 131, 329
Tru9I TTAA 2 cut(s) 131, 329
TscAI CASTG 1 cut(s) 388
TseI GCWGC 3 cut(s) 55, 100, 194
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 306
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.