RchiOBHm_Chr5g0072821

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005193
Physical Location & Seq
Reverse (-)
78887123 .. 78888827
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34774

Sequence Viewer

Length: 183 bp
ATGGCGCTGCTTGCCAAAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGAAGAGTTCCACTTTGATCAAAGCAAAATGAGGTCAGAGATCAGATTGCTTGAAGGGCGGATCAAGCCAATGCTTATACAAATGAACTGGAGAACAAAGTTTCACATCTGGAGGAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

60

Amino Acids

7.6

Weight (kDa)

10.1

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 6 - 44 3e-11 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 113
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 7, 26
AvaI CYCGRG 1 cut(s) 27
BclI TGATCA 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 50, 152
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 50, 152
Bsh1236I CGCG 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 3 cut(s) 76, 99, 120
BspACI CCGC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 24
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 2 cut(s) 50, 152
BssMI GATC 3 cut(s) 76, 99, 120
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 26
BstKTI GATC 3 cut(s) 79, 102, 123
BstMBI GATC 3 cut(s) 76, 99, 120
BstMWI GCNNNNNNNGC 3 cut(s) 11, 115, 124
BstUI CGCG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 12
CfoI GCGC 2 cut(s) 7, 26
CviJI RGCY 2 cut(s) 32, 127
CviKI_1 RGCY 2 cut(s) 32, 127
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 78, 101, 122
DpnII GATC 3 cut(s) 76, 99, 120
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 27
FaiI YATR 1 cut(s) 137
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
GlaI GCGC 2 cut(s) 6, 25
GluI GCNGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 2 cut(s) 7, 26
Hin6I GCGC 2 cut(s) 5, 24
HinP1I GCGC 2 cut(s) 5, 24
Hpy188I TCNGA 2 cut(s) 97, 104
Hpy188III TCNNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 115, 124
HpyF3I CTNAG 1 cut(s) 33
HspAI GCGC 2 cut(s) 5, 24
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 99, 120
LpnPI CCDG 3 cut(s) 31, 133, 154
MalI GATC 3 cut(s) 78, 101, 122
MboI GATC 3 cut(s) 76, 99, 120
MboII GAAGA 2 cut(s) 71, 74
MnlI CCTC 3 cut(s) 84, 165, 168
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 11, 115, 124
NdeII GATC 3 cut(s) 76, 99, 120
PkrI GCNGC 1 cut(s) 9
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 3 cut(s) 76, 99, 120
SetI ASST 1 cut(s) 95
SgeI CNNG 9 cut(s) 23, 35, 39, 41, 53, 58, 122, 136, 160
SsiI CCGC 1 cut(s) 118
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.