Rh3CG276600

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005193
Physical Location & Seq
Reverse (-)
27562932 .. 27563466
535 bp
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UTR
Exon/CDS
Intron
Rh3CG276600.1

Sequence Viewer

Length: 273 bp
ATGTTTAAGTTCATTATGAAGGTTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGGCGCTGCTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGCGAGAAAAAAGAAGATAGGTTCCACTTTGATCAAAGCAAAATGAGGTCAGAGATCAGATTGCTTGAAGGGCGTATCAAGCCAATTGATGTACTTTCCAAGCATCTTGATGGCTCAGATGTTTATTATCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

90

Amino Acids

10.93

Weight (kDa)

7.79

Isoelectric Point (pI)

54.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 36 - 82 3.5e-14 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 2 cut(s) 68, 203
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 97
AspLEI GCGC 2 cut(s) 97, 116
AvaI CYCGRG 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 239
BclI TGATCA 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 247
BseMII CTCAG 2 cut(s) 114, 264
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 166, 189
BspCNI CTCAG 2 cut(s) 115, 263
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 158
BssMI GATC 2 cut(s) 166, 189
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 123, 250
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 2 cut(s) 97, 116
BstKTI GATC 2 cut(s) 169, 192
BstMBI GATC 2 cut(s) 166, 189
BstMWI GCNNNNNNNGC 3 cut(s) 101, 205, 214
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 2 cut(s) 97, 116
Csp6I GTAC 1 cut(s) 227
CviAII CATG 1 cut(s) 80
CviJI RGCY 4 cut(s) 74, 122, 217, 249
CviKI_1 RGCY 4 cut(s) 74, 122, 217, 249
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 123, 250
DpnI GATC 2 cut(s) 168, 191
DpnII GATC 2 cut(s) 166, 189
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 117
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 17, 81, 268
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 2 cut(s) 96, 115
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 98
HhaI GCGC 2 cut(s) 97, 116
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 2 cut(s) 95, 114
HinP1I GCGC 2 cut(s) 95, 114
Hpy188I TCNGA 3 cut(s) 187, 194, 253
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 13, 42, 197
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 205, 214
HpyF3I CTNAG 2 cut(s) 123, 250
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 2 cut(s) 95, 114
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 166, 189
LpnPI CCDG 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 247
MalI GATC 2 cut(s) 168, 191
MboI GATC 2 cut(s) 166, 189
MboII GAAGA 3 cut(s) 55, 98, 161
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 219
MnlI CCTC 3 cut(s) 46, 76, 174
MseI TTAA 2 cut(s) 6, 39
MslI CAYNNNNRTG 1 cut(s) 243
MunI CAATTG 1 cut(s) 219
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 101, 205, 214
NdeII GATC 2 cut(s) 166, 189
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 158
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 6, 39
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 166, 189
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 24, 39, 76, 158, 185
SfaNI GCATC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 219
TasI AATT 1 cut(s) 219
TatI WGTACW 1 cut(s) 226
Tru1I TTAA 2 cut(s) 6, 39
Tru9I TTAA 2 cut(s) 6, 39
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.