RLG00000029359

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005193
Physical Location & Seq
Reverse (-)
37019604 .. 37021345
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029359

Sequence Viewer

Length: 450 bp
ATGTTTAAGTTCATTATGCAGGCTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGCGGAAGAAATGGCGCTGCTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAGAAGAAGAAGAGTTCCACTTTGATCAAAGTAAAATGAGGTCAGAGATCAGATTGCTTGAAGGGCGTATCAAGCCATTGTACTTTCCAAGCATCTTGATGGCTCAGATGTTTATTATCTATGCTGAAAATTCCACCTATGCTTTTCTTTTGTTAATTTTATCTGAAAAGAGAGAGTTGCAACAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGACGCATTGTTGGGAATTAAGGATTTATTCCTTAAGCATCCAGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

150

Amino Acids

18.25

Weight (kDa)

6.87

Isoelectric Point (pI)

69.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 36 - 74 8.3e-10 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 136
AflII CTTAAG 1 cut(s) 430
AgsI TTSAA 2 cut(s) 68, 203
AjiI CACGTC 1 cut(s) 362
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 2 cut(s) 97, 116
AvaI CYCGRG 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 235
BclI TGATCA 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 430
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 243, 444
BmuI ACTGGG 1 cut(s) 145
BpmI CTGGAG 2 cut(s) 365, 386
Bpu10I CCTNAGC 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 140, 348
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 3 cut(s) 15, 114, 260
BseNI ACTGG 2 cut(s) 140, 348
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 166, 189
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 3 cut(s) 16, 115, 259
BspFNI CGCG 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 430
BsrI ACTGG 2 cut(s) 140, 348
BssMI GATC 2 cut(s) 166, 189
Bst6I CTCTTC 3 cut(s) 38, 147, 437
BstAFI CTTAAG 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 21, 102
BstDEI CTNAG 4 cut(s) 24, 123, 246, 386
BstF5I GGATG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 2 cut(s) 97, 116
BstKTI GATC 2 cut(s) 169, 192
BstMBI GATC 2 cut(s) 166, 189
BstMWI GCNNNNNNNGC 6 cut(s) 80, 101, 205, 214, 391, 400
BstNSI RCATGY 1 cut(s) 83
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 84
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 21, 102
CfoI GCGC 2 cut(s) 97, 116
CseI GACGC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 80
CviJI RGCY 7 cut(s) 23, 74, 122, 217, 245, 329, 385
CviKI_1 RGCY 7 cut(s) 23, 74, 122, 217, 245, 329, 385
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 4 cut(s) 24, 123, 246, 386
DpnI GATC 2 cut(s) 168, 191
DpnII GATC 2 cut(s) 166, 189
Eam1104I CTCTTC 3 cut(s) 38, 147, 437
EarI CTCTTC 3 cut(s) 38, 147, 437
Eco88I CYCGRG 1 cut(s) 117
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 17, 81, 264, 282, 333
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 2 cut(s) 96, 115
GluI GCNGC 1 cut(s) 98
GsuI CTGGAG 2 cut(s) 365, 386
HaeII RGCGCY 1 cut(s) 98
HgaI GACGC 1 cut(s) 409
HhaI GCGC 2 cut(s) 97, 116
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 2 cut(s) 95, 114
HinP1I GCGC 2 cut(s) 95, 114
Hpy188I TCNGA 4 cut(s) 187, 194, 249, 307
Hpy188III TCNNGA 3 cut(s) 238, 365, 439
HpyAV CCTTC 2 cut(s) 42, 197
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 19, 322
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 101, 205, 214, 391, 400
HpyF3I CTNAG 4 cut(s) 24, 123, 246, 386
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 2 cut(s) 95, 114
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 166, 189
LpnPI CCDG 6 cut(s) 5, 118, 121, 311, 329, 350
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 243, 444
MaeII ACGT 1 cut(s) 361
MalI GATC 2 cut(s) 168, 191
MboI GATC 2 cut(s) 166, 189
MboII GAAGA 5 cut(s) 55, 98, 158, 161, 164
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 271, 297, 413
MnlI CCTC 4 cut(s) 46, 174, 361, 364
MseI TTAA 5 cut(s) 6, 39, 296, 416, 431
MslI CAYNNNNRTG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 430
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 6 cut(s) 80, 101, 205, 214, 391, 400
NdeII GATC 2 cut(s) 166, 189
NlaIII CATG 1 cut(s) 83
NspI RCATGY 1 cut(s) 83
PkrI GCNGC 1 cut(s) 99
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 5 cut(s) 6, 39, 296, 416, 431
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 2 cut(s) 166, 189
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 39, 76, 185, 281, 364
SfaNI GCATC 2 cut(s) 243, 444
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 3 cut(s) 271, 297, 413
SsiI CCGC 1 cut(s) 83
TaiI ACGT 1 cut(s) 364
TasI AATT 3 cut(s) 271, 297, 413
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 5 cut(s) 6, 39, 296, 416, 431
Tru9I TTAA 5 cut(s) 6, 39, 296, 416, 431
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 354, 393
Vha464I CTTAAG 1 cut(s) 430
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.