Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2739872 .. 2754274

Gene Structure 14403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG040900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGAAGCTTCTTAATCCATATGATAAGGCATCAGCATTACCATTTCAAAGCATGAAAAAAGCATTCAAGGAGAAGGCTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGGCGCTGCTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGAAAAGTTCCACTTTGATCAAAGCAAAATGAGGTCAGAGATCAGATTGCTTGAAGGGCGTATCAAGCCAATGTACTTTCCAAGCCGATCCGATAACATCGATCTGGTCGAGATCGAGGCCGAGGAAGAGGAAGACTGTGGGGCGCTCAGAGTTGTCGACAGAGCCCTGCCGCAGTTCTGCAAATCATCCGGTCTGAATCGGACGGCATGGTTCGTCGGAGGAACCGAAAGAGGTTCGCAGAGAGACGATCACCGCCACGGCGAAGACCAGCCACACCTTCGTCTCAAACAACATCTTCGACCATCGTCTTCTTCTTCAACGGCACCGGCGAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

181

Amino Acids

21.08

Weight (kDa)

7.03

Isoelectric Point (pI)

75.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cactin_mid	PF10312	55 - 93	7.8e-11	Conserved mid region of cactin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	377, 460
AclWI	GGATC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	5 cut(s)	50, 70, 125, 260, 525
AluBI	AGCT	3 cut(s)	10, 131, 540
AluI	AGCT	3 cut(s)	10, 131, 540
Alw21I	GWGCWC	2 cut(s)	121, 542
Alw26I	GTCTC	2 cut(s)	444, 494
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	154
AspLEI	GCGC	3 cut(s)	154, 173, 352
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	373, 542
BbsI	GAAGAC	3 cut(s)	345, 477, 507
Bbv12I	GWGCWC	2 cut(s)	121, 542
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	3 cut(s)	426, 481, 543
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	444, 494
BfoI	RGCGCY	2 cut(s)	155, 353
BisI	GCNGC	2 cut(s)	155, 377
BlsI	GCNGC	2 cut(s)	156, 378
BmeT110I	CYCGRG	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	430, 531
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	511
BpiI	GAAGAC	3 cut(s)	345, 477, 507
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	327, 463
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	327, 463
BseGI	GGATG	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	72, 171, 367
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	529
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	121, 542
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	396, 533
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	444, 494
BsmBI	CGTCTC	2 cut(s)	444, 494
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	121, 373, 542
Bsp143I	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
BspACI	CCGC	2 cut(s)	377, 460
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	3 cut(s)	73, 172, 366
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	430, 531
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	327, 463
BssMI	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	95, 327
BstC8I	GCNNGC	2 cut(s)	159, 538
BstDEI	CTNAG	3 cut(s)	81, 180, 353
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	392
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	2 cut(s)	155, 353
BstHHI	GCGC	3 cut(s)	154, 173, 352
BstKTI	GATC	6 cut(s)	226, 249, 296, 310, 321, 457
BstMAI	GTCTC	2 cut(s)	444, 494
BstMBI	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 262, 271
BstPAI	GACNNNNGTC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	3 cut(s)	345, 477, 507
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	159, 538
CfoI	GCGC	3 cut(s)	154, 173, 352
Cfr10I	RCCGGY	1 cut(s)	532
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	55, 137, 414
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	81, 180, 353
DpnI	GATC	6 cut(s)	225, 248, 295, 309, 320, 456
DpnII	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
Eam1104I	CTCTTC	2 cut(s)	95, 327
EarI	CTCTTC	2 cut(s)	95, 327
Ecl136II	GAGCTC	1 cut(s)	540
Eco24I	GRGCYC	2 cut(s)	373, 542
Eco53kI	GAGCTC	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	540
EcoT38I	GRGCYC	2 cut(s)	373, 542
Esp3I	CGTCTC	2 cut(s)	444, 494
FaeI	CATG	3 cut(s)	58, 140, 417
FaiI	YATR	6 cut(s)	22, 24, 56, 138, 415, 544
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	3 cut(s)	54, 136, 413
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	155, 377
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	2 cut(s)	373, 542
Fsp4HI	GCNGC	2 cut(s)	155, 377
GlaI	GCGC	3 cut(s)	153, 172, 351
GluI	GCNGC	2 cut(s)	155, 377
HaeII	RGCGCY	2 cut(s)	155, 353
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	2 cut(s)	396, 533
HhaI	GCGC	3 cut(s)	154, 173, 352
Hin1II	CATG	3 cut(s)	58, 140, 417
Hin6I	GCGC	3 cut(s)	152, 171, 350
HinP1I	GCGC	3 cut(s)	152, 171, 350
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	396, 533
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	7 cut(s)	244, 251, 298, 356, 402, 408, 425
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	4 cut(s)	70, 99, 254, 494
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 262, 271
HpyF3I	CTNAG	3 cut(s)	81, 180, 353
Hsp92II	CATG	3 cut(s)	58, 140, 417
HspAI	GCGC	3 cut(s)	152, 171, 350
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
LpnPI	CCDG	6 cut(s)	175, 178, 296, 386, 409, 488
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	41
MalI	GATC	6 cut(s)	225, 248, 295, 309, 320, 456
MboI	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
MhlI	GDGCHC	3 cut(s)	121, 373, 542
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	8 cut(s)	103, 133, 231, 316, 322, 328, 419, 431
MseI	TTAA	2 cut(s)	15, 96
MspI	CCGG	2 cut(s)	396, 533
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	158, 262, 271
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
NlaIII	CATG	3 cut(s)	58, 140, 417
NlaIV	GGNNCC	2 cut(s)	430, 531
NmeAIII	GCCGAG	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	3 cut(s)	312, 429, 533
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	156, 378
PshAI	GACNNNNGTC	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	430, 531
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	542
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	15, 96
SatI	GCNGC	2 cut(s)	155, 377
Sau3AI	GATC	6 cut(s)	223, 246, 293, 307, 318, 454
SduI	GDGCHC	3 cut(s)	121, 373, 542
SetI	ASST	7 cut(s)	12, 96, 133, 242, 442, 486, 542
SfaNI	GCATC	1 cut(s)	41
SgrAI	CRCCGGYG	1 cut(s)	532
SsiI	CCGC	2 cut(s)	377, 460
SstI	GAGCTC	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	5 cut(s)	306, 315, 321, 363, 505
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	15, 96
Tru9I	TTAA	2 cut(s)	15, 96
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.