Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002503.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

81837 .. 82490

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002503.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggatcaaaatgtttcagattcatcttcagatgctgcaaatgaggaattttgggatcttgccaattcatcatcagacgaagaattgatgaatctgcagattactgctctacaagagatgggaagaagaagacgccggggctcaattcctggtcgcatatataaagatagacaaagattgcaaggccacgaaacactctacaatgattattttgatgcaaatcctgttcatgaagaagttgtatttcggagaaggtttcggatgcatcgacatctttttcttcgaattctagctgcagtagaagatcgtgactcctattttgttcaaaaaagggattcagcaggacgtcttgggctatcgtctcttcaaaaagttaccgctgcaatgaggatgcttgcctatggaattggggcagatgttgtggatgactatcttagaatcggtgaaagcactgcaattgaagctatgagaaggtttgtccaagctgttattgatgtatttcgtgctgaatacttaagaaggccaacttctgatgatatttccaaattgctattgattggtgagagtcgtggatttcctggaatgcttggtagtattgattgtatgcactggaagtggaagaattgtccgttatgttgcttcagtagtccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

217

Amino Acids

25.04

Weight (kDa)

6.97

Isoelectric Point (pI)

68.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	12, 63
AcsI	RAATTY	2 cut(s)	47, 285
AcuI	CTGAAG	2 cut(s)	12, 625
AcyI	GRCGYC	2 cut(s)	133, 346
AflII	CTTAAG	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	326, 368, 461
AjnI	CCWGG	2 cut(s)	148, 577
AluBI	AGCT	3 cut(s)	293, 464, 485
AluI	AGCT	3 cut(s)	293, 464, 485
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	12, 63
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	2 cut(s)	184, 521
ApeKI	GCWGC	3 cut(s)	35, 293, 380
ApoI	RAATTY	2 cut(s)	47, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	455, 572
AsuII	TTCGAA	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	22, 280, 367
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	150, 579
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	95, 294
BfrI	CTTAAG	1 cut(s)	514
BisI	GCNGC	3 cut(s)	36, 294, 381
BlsI	GCNGC	3 cut(s)	37, 295, 382
Bme1390I	CCNGG	3 cut(s)	137, 150, 579
BmrFI	CCNGG	3 cut(s)	137, 150, 579
BmsI	GCATC	5 cut(s)	22, 205, 252, 274, 381
BpiI	GAAGAC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	137
BsaBI	GATNNNNATC	2 cut(s)	219, 429
BsaHI	GRCGYC	2 cut(s)	133, 346
BsaJI	CCNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	2 cut(s)	219, 429
BseBI	CCWGG	2 cut(s)	150, 579
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	267, 396, 430
BseJI	GATNNNNATC	2 cut(s)	219, 429
BseMI	GCAATG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	614
BseXI	GCAGC	3 cut(s)	22, 280, 367
BshFI	GGCC	2 cut(s)	186, 523
BsiSI	CCGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	186, 523
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	4, 55, 304
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	2 cut(s)	186, 523
BspHI	TCATGA	1 cut(s)	229
BspMAI	CTGCAG	2 cut(s)	99, 298
BspPI	GGATC	2 cut(s)	12, 63
BspT104I	TTCGAA	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	4, 55, 304
BssNI	GRCGYC	2 cut(s)	133, 346
Bst2UI	CCWGG	2 cut(s)	150, 579
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	2 cut(s)	133, 346
BstAFI	CTTAAG	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	434
BstF5I	GGATG	3 cut(s)	267, 396, 430
BstKTI	GATC	3 cut(s)	7, 58, 307
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	4, 55, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	150, 579
BstSCI	CCNGG	3 cut(s)	135, 148, 577
BstSFI	CTRYAG	2 cut(s)	95, 294
BstV1I	GCAGC	3 cut(s)	22, 280, 367
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	186, 523
BtsCI	GGATG	3 cut(s)	267, 396, 430
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	450, 607
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	229
CseI	GACGC	1 cut(s)	141
CviAII	CATG	2 cut(s)	230, 651
CviJI	RGCY	7 cut(s)	141, 186, 293, 355, 464, 485, 523
CviKI_1	RGCY	7 cut(s)	141, 186, 293, 355, 464, 485, 523
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	3 cut(s)	6, 57, 306
DpnII	GATC	3 cut(s)	4, 55, 304
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	12, 625
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	148, 577
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	2 cut(s)	233, 654
FaiI	YATR	9 cut(s)	158, 160, 162, 231, 402, 467, 605, 634, 652
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	2 cut(s)	229, 650
Fnu4HI	GCNGC	3 cut(s)	36, 294, 381
FokI	GGATG	3 cut(s)	274, 403, 437
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	36, 294, 381
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	3 cut(s)	36, 294, 381
HaeIII	GGCC	2 cut(s)	186, 523
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	2 cut(s)	133, 346
Hin1II	CATG	2 cut(s)	233, 654
HinfI	GANTC	6 cut(s)	20, 91, 311, 335, 438, 565
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	2 cut(s)	455, 572
Hpy188I	TCNGA	6 cut(s)	19, 31, 76, 249, 261, 532
Hpy188III	TCNNGA	2 cut(s)	230, 308
HpyAV	CCTTC	3 cut(s)	246, 465, 513
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	9 cut(s)	38, 97, 181, 218, 265, 296, 383, 455, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	133, 346
Hsp92II	CATG	2 cut(s)	233, 654
Kzo9I	GATC	3 cut(s)	4, 55, 304
LpnPI	CCDG	8 cut(s)	135, 149, 162, 237, 327, 564, 591, 595
Lsp1109I	GCAGC	3 cut(s)	22, 280, 367
LweI	GCATC	5 cut(s)	22, 205, 252, 274, 381
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	308, 373
MalI	GATC	3 cut(s)	6, 57, 306
MboI	GATC	3 cut(s)	4, 55, 304
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	9 cut(s)	47, 64, 83, 144, 285, 405, 456, 545, 622
MlyI	GAGTC	2 cut(s)	305, 574
MnlI	CCTC	2 cut(s)	37, 381
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	514
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	3 cut(s)	137, 150, 579
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	2 cut(s)	150, 579
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	4, 55, 304
NlaIII	CATG	2 cut(s)	233, 654
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	283
PagI	TCATGA	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	20, 91, 335, 438
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	37, 295, 382
PleI	GAGTC	2 cut(s)	305, 573
PpsI	GAGTC	2 cut(s)	305, 573
Psp6I	CCWGG	2 cut(s)	148, 577
PspGI	CCWGG	2 cut(s)	148, 577
PstI	CTGCAG	2 cut(s)	99, 298
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	3 cut(s)	36, 294, 381
Sau3AI	GATC	3 cut(s)	4, 55, 304
SchI	GAGTC	2 cut(s)	305, 574
ScrFI	CCNGG	3 cut(s)	137, 150, 579
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	6 cut(s)	257, 295, 349, 466, 476, 487
SfaNI	GCATC	5 cut(s)	22, 205, 252, 274, 381
SfcI	CTRYAG	2 cut(s)	95, 294
SfuI	TTCGAA	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	9 cut(s)	47, 64, 83, 144, 285, 405, 456, 545, 622
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	135, 148, 577
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	268, 283
TasI	AATT	9 cut(s)	47, 64, 83, 144, 285, 405, 456, 545, 622
TfiI	GAWTC	4 cut(s)	20, 91, 335, 438
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	2 cut(s)	457, 614
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	35, 293, 380
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	5 cut(s)	12, 57, 104, 218, 246
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	2 cut(s)	457, 614
Vha464I	CTTAAG	1 cut(s)	514
XapI	RAATTY	2 cut(s)	47, 285
XspI	CTAG	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.