Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Reverse (-)

151414 .. 159226

Gene Structure 7813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgccgctgccgatcttctcaccacctcggagcctccatcgtgacgctgaccgaaattggaggcgttgggttgctgggccttgtcgattggaatcagactcagatcgaaatctgaatcagggctggaccttgtcgatcgaagtcggaatcaaaatcgcggctgggacttacagtcaagtgtcttcgctgcaactggagaaagctccgatctctttctccaagtccggagccatggcgcggcagtgtcagtgtcgtgctgaggaagagagctgccggcatactgcgagagtgaagagacaaagagagcgtcgtttggagagagagagagagagagagagagagagaggaaagggagtggcaatgttagcggcgaaagaggaaggggtggtggtggaagagagggaagcagagttgatcaagaaagtgaatgccattgctaatagcgcagctcgtcgatttcattcacagctaaatttcggtgggcggcgactggtgatcggaattcagcagccggcggcgaaagttggcctgattccgatgacctgtgcgattctagcgaccgttaatcaaaatccggcgacgtgcaacaggaatccggtggccggtgactggaatccgactgccgatgaccgggctccagcgaagtcccctatgttcattatgaaggctgagatagaaaatgttaagaagagaagggaggaaagagcacttgaaaaagctcaacatgaggaagaaatggcgctgcttgccagagaacgcgcttgggctgagttccaagactgggagaaaaaagaagaggctcgatctatgcctcaaattctggctttgaagtgggaaaagcctgatgctgagttgtggatgggaagccatgattttggaccctcattcttgattcatcaggtggtttctgtgagaaaggcattgtcgatactggcacatccggataaggatttggccaaggtacggttagcgagtaacctacgaaggatagatgacagcggtggtactaagcctcaactcctaaatccgaacagctacactgcaaactgggcatttgaaaccgaagagcccaggggaagcacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CactinC_cactus Cactin_mid

Protein Analysis

361

Amino Acids

40.9

Weight (kDa)

9.38

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	158, 238, 759
AccIII	TCCGGA	2 cut(s)	224, 940
AciI	CCGC	7 cut(s)	5, 158, 238, 368, 484, 515, 999
AcoI	YGGCCR	2 cut(s)	600, 954
AcsI	RAATTY	3 cut(s)	472, 501, 816
AfaI	GTAC	2 cut(s)	963, 1006
AfiI	CCNNNNNNNGG	6 cut(s)	237, 602, 609, 630, 781, 963
AgsI	TTSAA	3 cut(s)	713, 829, 1058
AhdI	GACNNNNNGTC	1 cut(s)	171
AjiI	CACGTC	1 cut(s)	582
AjnI	CCWGG	1 cut(s)	1070
AluBI	AGCT	6 cut(s)	203, 270, 449, 469, 719, 1035
AluI	AGCT	6 cut(s)	203, 270, 449, 469, 719, 1035
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	1 cut(s)	289
Aor13HI	TCCGGA	2 cut(s)	224, 940
AoxI	GGCC	4 cut(s)	77, 526, 600, 954
ApeKI	GCWGC	6 cut(s)	7, 187, 270, 446, 508, 742
ApoI	RAATTY	3 cut(s)	472, 501, 816
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AspLEI	GCGC	4 cut(s)	238, 446, 742, 761
AspS9I	GGNCC	3 cut(s)	77, 126, 878
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	3 cut(s)	12, 505, 617
AvaII	GGWCC	2 cut(s)	126, 878
BalI	TGGCCA	1 cut(s)	956
BanII	GRGCYC	2 cut(s)	637, 1071
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	709
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	5 cut(s)	174, 257, 458, 520, 729
BccI	CCATC	2 cut(s)	45, 853
BciT130I	CCWGG	1 cut(s)	1072
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	554
BfoI	RGCGCY	1 cut(s)	743
Bme1390I	CCNGG	2 cut(s)	632, 1072
Bme18I	GGWCC	2 cut(s)	126, 878
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmgBI	CACGTC	1 cut(s)	582
BmgT120I	GGNCC	3 cut(s)	77, 126, 878
BmiI	GGNNCC	4 cut(s)	32, 229, 636, 880
BmrFI	CCNGG	2 cut(s)	632, 1072
BmrI	ACTGGG	2 cut(s)	790, 1057
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	2 cut(s)	790, 1057
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	2 cut(s)	215, 621
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	632
BsaBI	GATNNNNATC	2 cut(s)	91, 108
BsaJI	CCNNGG	5 cut(s)	26, 231, 957, 1070, 1071
BsaWI	WCCGGW	3 cut(s)	224, 595, 940
Bsc4I	CCNNNNNNNGG	6 cut(s)	237, 602, 609, 630, 781, 963
Bse118I	RCCGGY	3 cut(s)	273, 511, 602
Bse1I	ACTGG	6 cut(s)	198, 495, 614, 785, 936, 1052
Bse3DI	GCAATG	2 cut(s)	366, 432
Bse8I	GATNNNNATC	2 cut(s)	91, 108
BseAI	TCCGGA	2 cut(s)	224, 940
BseBI	CCWGG	1 cut(s)	1072
BseDI	CCNNGG	5 cut(s)	26, 231, 957, 1070, 1071
BseGI	GGATG	2 cut(s)	864, 937
BseJI	GATNNNNATC	2 cut(s)	91, 108
BseLI	CCNNNNNNNGG	6 cut(s)	237, 602, 609, 630, 781, 963
BseMI	GCAATG	2 cut(s)	366, 432
BseMII	CTCAG	5 cut(s)	114, 249, 660, 759, 840
BseNI	ACTGG	6 cut(s)	198, 495, 614, 785, 936, 1052
BseXI	GCAGC	5 cut(s)	174, 257, 458, 520, 729
BseYI	CCCAGC	2 cut(s)	74, 161
Bsh1236I	CGCG	3 cut(s)	158, 238, 759
Bsh1285I	CGRYCG	2 cut(s)	138, 561
BshFI	GGCC	4 cut(s)	79, 528, 602, 956
BsiEI	CGRYCG	2 cut(s)	138, 561
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	8 cut(s)	225, 274, 512, 575, 596, 603, 631, 941
BslFI	GGGAC	2 cut(s)	178, 631
BslI	CCNNNNNNNGG	6 cut(s)	237, 602, 609, 630, 781, 963
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	178, 631
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	79, 528, 602, 956
Bsp1286I	GDGCHC	3 cut(s)	637, 709, 1071
Bsp13I	TCCGGA	2 cut(s)	224, 940
Bsp143I	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	7 cut(s)	5, 158, 238, 368, 484, 515, 999
BspANI	GGCC	4 cut(s)	79, 528, 602, 956
BspCNI	CTCAG	5 cut(s)	113, 250, 661, 760, 841
BspEI	TCCGGA	2 cut(s)	224, 940
BspFNI	CGCG	3 cut(s)	158, 238, 759
BspLI	GGNNCC	4 cut(s)	32, 229, 636, 880
BspQI	GCTCTTC	1 cut(s)	1059
BsrDI	GCAATG	2 cut(s)	366, 432
BsrFI	RCCGGY	3 cut(s)	273, 511, 602
BsrI	ACTGG	6 cut(s)	198, 495, 614, 785, 936, 1052
BssAI	RCCGGY	3 cut(s)	273, 511, 602
BssECI	CCNNGG	5 cut(s)	26, 231, 957, 1070, 1071
BssMI	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
BssT1I	CCWWGG	2 cut(s)	231, 957
Bst2UI	CCWGG	1 cut(s)	1072
Bst4CI	ACNGT	3 cut(s)	173, 562, 966
Bst6I	CTCTTC	6 cut(s)	258, 287, 390, 683, 789, 1059
BstC8I	GCNNGC	3 cut(s)	275, 513, 747
BstDEI	CTNAG	6 cut(s)	100, 258, 669, 768, 849, 1008
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	864, 937
BstFNI	CGCG	3 cut(s)	158, 238, 759
BstH2I	RGCGCY	1 cut(s)	743
BstHHI	GCGC	4 cut(s)	238, 446, 742, 761
BstKTI	GATC	7 cut(s)	15, 106, 138, 210, 417, 498, 806
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
BstMCI	CGRYCG	2 cut(s)	138, 561
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 443, 554, 746, 1049
BstNI	CCWGG	1 cut(s)	1072
BstSCI	CCNGG	2 cut(s)	630, 1070
BstUI	CGCG	3 cut(s)	158, 238, 759
BstV1I	GCAGC	5 cut(s)	174, 257, 458, 520, 729
BstV2I	GAAGAC	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	875
BsuRI	GGCC	4 cut(s)	79, 528, 602, 956
BtgI	CCRYGG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	864, 937
BtsI	GCAGTG	2 cut(s)	248, 1038
BtsIMutI	CAGTG	3 cut(s)	248, 254, 1038
Cac8I	GCNNGC	3 cut(s)	275, 513, 747
CfoI	GCGC	4 cut(s)	238, 446, 742, 761
Cfr10I	RCCGGY	3 cut(s)	273, 511, 602
Cfr13I	GGNCC	3 cut(s)	77, 126, 878
CseI	GACGC	2 cut(s)	53, 296
Csp6I	GTAC	2 cut(s)	962, 1005
CviAII	CATG	3 cut(s)	232, 725, 869
CviQI	GTAC	2 cut(s)	962, 1005
DdeI	CTNAG	6 cut(s)	100, 258, 669, 768, 849, 1008
DpnI	GATC	7 cut(s)	14, 105, 137, 209, 416, 497, 805
DpnII	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
DriI	GACNNNNNGTC	1 cut(s)	171
EaeI	YGGCCR	2 cut(s)	600, 954
Eam1104I	CTCTTC	6 cut(s)	258, 287, 390, 683, 789, 1059
Eam1105I	GACNNNNNGTC	1 cut(s)	171
EarI	CTCTTC	6 cut(s)	258, 287, 390, 683, 789, 1059
Eco130I	CCWWGG	2 cut(s)	231, 957
Eco24I	GRGCYC	2 cut(s)	637, 1071
Eco47I	GGWCC	2 cut(s)	126, 878
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	1070
EcoT14I	CCWWGG	2 cut(s)	231, 957
EcoT38I	GRGCYC	2 cut(s)	637, 1071
ErhI	CCWWGG	2 cut(s)	231, 957
FaeI	CATG	3 cut(s)	235, 728, 872
FaiI	YATR	8 cut(s)	233, 279, 653, 662, 726, 809, 870, 1084
FaqI	GGGAC	2 cut(s)	178, 631
FatI	CATG	3 cut(s)	231, 724, 868
FbaI	TGATCA	1 cut(s)	414
FokI	GGATG	2 cut(s)	871, 924
FriOI	GRGCYC	2 cut(s)	637, 1071
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	4 cut(s)	237, 445, 741, 760
GsaI	CCCAGC	2 cut(s)	78, 165
GsuI	CTGGAG	2 cut(s)	215, 621
HaeII	RGCGCY	1 cut(s)	743
HaeIII	GGCC	4 cut(s)	79, 528, 602, 956
HapII	CCGG	8 cut(s)	225, 274, 512, 575, 596, 603, 631, 941
HgaI	GACGC	2 cut(s)	53, 296
HhaI	GCGC	4 cut(s)	238, 446, 742, 761
Hin1II	CATG	3 cut(s)	235, 728, 872
Hin6I	GCGC	4 cut(s)	236, 444, 740, 759
HinP1I	GCGC	4 cut(s)	236, 444, 740, 759
HinfI	GANTC	9 cut(s)	92, 98, 115, 147, 532, 550, 592, 613, 892
HpaII	CCGG	8 cut(s)	225, 274, 512, 575, 596, 603, 631, 941
HphI	GGTGA	3 cut(s)	12, 505, 617
Hpy188III	TCNNGA	5 cut(s)	41, 225, 418, 889, 941
Hpy99I	CGWCG	3 cut(s)	312, 456, 583
HpyAV	CCTTC	4 cut(s)	374, 658, 687, 978
HpyCH4III	ACNGT	3 cut(s)	173, 562, 966
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	3 cut(s)	190, 585, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 443, 554, 746, 1049
HpyF3I	CTNAG	6 cut(s)	100, 258, 669, 768, 849, 1008
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	235, 728, 872
HspAI	GCGC	4 cut(s)	236, 444, 740, 759
Kpn2I	TCCGGA	2 cut(s)	224, 940
KroI	GCCGGC	2 cut(s)	273, 511
KroNI	GCCGGC	2 cut(s)	275, 513
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
LguI	GCTCTTC	1 cut(s)	1059
LmnI	GCTCC	4 cut(s)	30, 208, 227, 640
Lsp1109I	GCAGC	5 cut(s)	174, 257, 458, 520, 729
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	3 cut(s)	41, 605, 974
MalI	GATC	7 cut(s)	14, 105, 137, 209, 416, 497, 805
MboI	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
MboII	GAAGA	9 cut(s)	7, 174, 275, 304, 407, 700, 743, 806, 1076
MhlI	GDGCHC	3 cut(s)	637, 709, 1071
MlsI	TGGCCA	1 cut(s)	956
MluCI	AATT	4 cut(s)	55, 472, 501, 816
MluNI	TGGCCA	1 cut(s)	956
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	124, 641
Mox20I	TGGCCA	1 cut(s)	956
MroI	TCCGGA	2 cut(s)	224, 940
MroNI	GCCGGC	2 cut(s)	273, 511
MscI	TGGCCA	1 cut(s)	956
MseI	TTAA	2 cut(s)	564, 684
Msp20I	TGGCCA	1 cut(s)	956
MspA1I	CMGCKG	2 cut(s)	7, 999
MspI	CCGG	8 cut(s)	225, 274, 512, 575, 596, 603, 631, 941
MspR9I	CCNGG	2 cut(s)	632, 1072
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	1072
MvnI	CGCG	3 cut(s)	158, 238, 759
MwoI	GCNNNNNNNGC	5 cut(s)	365, 443, 554, 746, 1049
NaeI	GCCGGC	2 cut(s)	275, 513
NciI	CCSGG	1 cut(s)	632
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
NgoMIV	GCCGGC	2 cut(s)	273, 511
NlaIII	CATG	3 cut(s)	235, 728, 872
NlaIV	GGNNCC	4 cut(s)	32, 229, 636, 880
NmuCI	GTSAC	2 cut(s)	41, 605
PasI	CCCWGGG	1 cut(s)	1071
PciSI	GCTCTTC	1 cut(s)	1059
PctI	GAATGC	1 cut(s)	433
PdiI	GCCGGC	2 cut(s)	275, 513
PfeI	GAWTC	8 cut(s)	92, 115, 147, 532, 550, 592, 613, 892
PflFI	GACNNNGTC	1 cut(s)	130
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	1070
PspFI	CCCAGC	2 cut(s)	74, 161
PspGI	CCWGG	1 cut(s)	1070
PspN4I	GGNNCC	4 cut(s)	32, 229, 636, 880
PspPI	GGNCC	3 cut(s)	77, 126, 878
PsyI	GACNNNGTC	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	138
RsaI	GTAC	2 cut(s)	963, 1006
RsaNI	GTAC	2 cut(s)	962, 1005
SapI	GCTCTTC	1 cut(s)	1059
SaqAI	TTAA	2 cut(s)	564, 684
Sau3AI	GATC	7 cut(s)	12, 103, 135, 207, 414, 495, 803
Sau96I	GGNCC	3 cut(s)	77, 126, 878
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	632, 1072
SduI	GDGCHC	3 cut(s)	637, 709, 1071
SfaNI	GCATC	1 cut(s)	835
SinI	GGWCC	2 cut(s)	126, 878
Sse9I	AATT	4 cut(s)	55, 472, 501, 816
SsiI	CCGC	7 cut(s)	5, 158, 238, 368, 484, 515, 999
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	630, 1070
StyI	CCWWGG	2 cut(s)	231, 957
TaaI	ACNGT	3 cut(s)	173, 562, 966
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	7 cut(s)	85, 106, 134, 138, 454, 802, 926
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	4 cut(s)	55, 472, 501, 816
TauI	GCSGC	6 cut(s)	7, 161, 241, 371, 487, 518
TfiI	GAWTC	8 cut(s)	92, 115, 147, 532, 550, 592, 613, 892
Tru1I	TTAA	2 cut(s)	564, 684
Tru9I	TTAA	2 cut(s)	564, 684
TscAI	CASTG	3 cut(s)	248, 254, 1045
TseFI	GTSAC	2 cut(s)	41, 605
TseI	GCWGC	6 cut(s)	7, 187, 270, 446, 508, 742
Tsp45I	GTSAC	2 cut(s)	41, 605
TspDTI	ATGAA	4 cut(s)	449, 646, 677, 884
TspRI	CASTG	3 cut(s)	248, 254, 1045
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	126, 878
XapI	RAATTY	3 cut(s)	472, 501, 816
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.