Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Reverse (-)

55541039 .. 55544962

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCCCGGCTTGGCGTAATCCTCTTTGTCTTTACTAAAAAATTCAAGCTTTCCTCTCTTCAAGTTTCTTTTCTCTTCTTGAATATTAGGAACATGGATCAAAATTTATCAGATTCATCTTCAGATGCTGCAAATGAGGAATTTTGGGATCCTGCCAATTCATCATCAGACGAAGAATTGATGAATCTGGAGATTGCTGCTCTACAAGAGAAGGGAAGAAGAAGACGCCGGGGCTCAATTCCTGGTCGCATATATAAAGATAGACAACGATTGCAAGGTCAGGAAACACTCTACAATGATTATTTTGCTGAAAATCCTGTTCATGAAGAAGTTGTATTTCGGAGAAGGTTTCGGATGCATCGACATGTTTTTCTTCGAATTCTAGCTGCAGTTGAAGCTGTTTGGTTGTTAACAGTCCAATTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

142

Amino Acids

16.66

Weight (kDa)

9.51

Isoelectric Point (pI)

75.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	105, 143, 156
AcsI	RAATTY	4 cut(s)	41, 103, 140, 378
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	46, 62, 82, 395
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	49, 386, 398
AluI	AGCT	3 cut(s)	49, 386, 398
AlwI	GGATC	3 cut(s)	105, 143, 156
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	128, 197, 386
ApoI	RAATTY	4 cut(s)	41, 103, 140, 378
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	7, 230
AsuII	TTCGAA	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	115, 184, 373
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	7, 230
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	3 cut(s)	129, 198, 387
BlsI	GCNGC	3 cut(s)	130, 199, 388
Bme1390I	CCNGG	3 cut(s)	7, 230, 243
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	7, 230, 243
BmsI	GCATC	3 cut(s)	115, 345, 367
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	376
BpuMI	CCSGG	2 cut(s)	7, 230
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	360
BseXI	GCAGC	3 cut(s)	115, 184, 373
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	7, 229
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	97, 148
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	105, 143, 156
BspT104I	TTCGAA	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	97, 148
BssNI	GRCGYC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	63, 80
BstACI	GRCGYC	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	100, 151
BstMBI	GATC	2 cut(s)	97, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	5, 228, 241
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	115, 184, 373
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	234
CviAII	CATG	3 cut(s)	94, 323, 365
CviJI	RGCY	7 cut(s)	5, 10, 49, 234, 386, 398, 426
CviKI_1	RGCY	7 cut(s)	5, 10, 49, 234, 386, 398, 426
DpnI	GATC	2 cut(s)	99, 150
DpnII	GATC	2 cut(s)	97, 148
Eam1104I	CTCTTC	2 cut(s)	63, 80
EarI	CTCTTC	2 cut(s)	63, 80
Eco24I	GRGCYC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	3 cut(s)	97, 326, 368
FaiI	YATR	6 cut(s)	95, 251, 253, 255, 324, 366
FatI	CATG	3 cut(s)	93, 322, 364
Fnu4HI	GCNGC	3 cut(s)	129, 198, 387
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	129, 198, 387
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	3 cut(s)	129, 198, 387
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	7, 229
HgaI	GACGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	97, 326, 368
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	113, 184
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	2 cut(s)	7, 229
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	5 cut(s)	112, 124, 169, 342, 354
Hpy188III	TCNNGA	4 cut(s)	79, 188, 281, 323
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	2 cut(s)	205, 339
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	131, 274, 358, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	97, 326, 368
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	97, 148
LpnPI	CCDG	8 cut(s)	20, 165, 173, 228, 242, 255, 266, 330
Lsp1109I	GCAGC	3 cut(s)	115, 184, 373
LweI	GCATC	3 cut(s)	115, 345, 367
MaeI	CTAG	1 cut(s)	383
MalI	GATC	2 cut(s)	99, 150
MboI	GATC	2 cut(s)	97, 148
MboII	GAAGA	9 cut(s)	50, 67, 111, 185, 228, 231, 234, 338, 365
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	8 cut(s)	41, 103, 140, 157, 176, 237, 378, 419
MnlI	CCTC	3 cut(s)	32, 64, 130
Mph1103I	ATGCAT	1 cut(s)	360
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	7, 229
MspR9I	CCNGG	3 cut(s)	7, 230, 243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	7, 230
NdeII	GATC	2 cut(s)	97, 148
NlaIII	CATG	3 cut(s)	97, 326, 368
NlaIV	GGNNCC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	376
PagI	TCATGA	1 cut(s)	322
PciI	ACATGT	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	113, 184
PkrI	GCNGC	3 cut(s)	130, 199, 388
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	3 cut(s)	129, 198, 387
Sau3AI	GATC	2 cut(s)	97, 148
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	7, 230, 243
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	5 cut(s)	51, 280, 350, 388, 400
SfaNI	GCATC	3 cut(s)	115, 345, 367
SfcI	CTRYAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	8 cut(s)	41, 103, 140, 157, 176, 237, 378, 419
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	3 cut(s)	5, 228, 241
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	2 cut(s)	361, 376
TasI	AATT	8 cut(s)	41, 103, 140, 157, 176, 237, 378, 419
TfiI	GAWTC	2 cut(s)	113, 184
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseI	GCWGC	3 cut(s)	128, 197, 386
TspDTI	ATGAA	5 cut(s)	105, 150, 197, 311, 339
XapI	RAATTY	4 cut(s)	41, 103, 140, 378
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.