Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019463.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Reverse (-)

5920 .. 6216

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019463.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgaggatgcttgcgtatggaattggggtagatgctgtggatgactatcttagaatcggtgaaagcactgtaattgaagctatgaaaaggtttgtccaagctgttatctttgtatttggagctgaatacttaagaaagccaacttctgatgatatttccatattgttattgattggtgagagtcgtggatttcctggaatgcttggtagtatcgattgtatgcactggaagtggaagaattgtctggttgcatggaaaggtatgttttctcgtggagatcatcgtgaccttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

98

Amino Acids

11.15

Weight (kDa)

6.82

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	80, 101, 122
AluI	AGCT	3 cut(s)	80, 101, 122
AsuHPI	GGTGA	2 cut(s)	71, 188
BauI	CACGAG	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	213
BseGI	GGATG	2 cut(s)	12, 46
BseJI	GATNNNNATC	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	213
BspTI	CTTAAG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	12, 46
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	12, 46
BtsIMutI	CAGTG	2 cut(s)	66, 223
Cac8I	GCNNGC	1 cut(s)	12
ClaI	ATCGAT	1 cut(s)	213
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	4 cut(s)	80, 101, 122, 139
CviKI_1	RGCY	4 cut(s)	80, 101, 122, 139
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	255
FaiI	YATR	6 cut(s)	18, 83, 161, 221, 253, 263
FatI	CATG	1 cut(s)	251
FokI	GGATG	2 cut(s)	19, 53
Hin1II	CATG	1 cut(s)	255
HinfI	GANTC	2 cut(s)	54, 181
HphI	GGTGA	2 cut(s)	71, 188
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	223, 251
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	4 cut(s)	180, 207, 211, 230
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	3 cut(s)	21, 72, 238
MlyI	GAGTC	1 cut(s)	190
MseI	TTAA	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	193
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	6 cut(s)	82, 92, 103, 124, 262, 291
SfaNI	GCATC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	3 cut(s)	21, 72, 238
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	21, 72, 238
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	2 cut(s)	73, 230
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	98, 281
TspRI	CASTG	2 cut(s)	73, 230
Vha464I	CTTAAG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.