Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005220.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

148714 .. 149142

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005220.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgcatcgacatctttttcttcgaattctagttgcggtagaagctcatgactcctattttgttcaaaaaagagattcagcaggtcgtcttggattatcgtctctacaaaatgttactgctgcaataaggatgcttgcctatggaatttggggagatgttatggatgactatcttataatcggtgaaaccactgtaattgaagctatgagaaggtttgtccaagccgttattgacgtatttggcgctgaatacttaagaagaccaacttctgatgatatttccagattgctattgattggtgagagtcgtgggtttcctagaaagcttggtagtatcgattgtatgcattggaagtggaagaattgtctggttgcttggaaagacatgttttctcgtggagatgattgtgaaaccttcattgattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

6.41

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	71
AciI	CCGC	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	24, 144
AflII	CTTAAG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	65, 200
AluBI	AGCT	3 cut(s)	44, 203, 325
AluI	AGCT	3 cut(s)	44, 203, 325
Alw26I	GTCTC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	24, 144
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	194, 311
AsuII	TTCGAA	1 cut(s)	22
BauI	CACGAG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	29, 318
BfoI	RGCGCY	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmsI	GCATC	2 cut(s)	13, 120
BpiI	GAAGAC	1 cut(s)	265
Bpu14I	TTCGAA	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	336
BseGI	GGATG	2 cut(s)	135, 169
BseJI	GATNNNNATC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
Bsp119I	TTCGAA	1 cut(s)	22
BspACI	CCGC	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	135, 169
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	135, 169
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	336
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	2 cut(s)	47, 385
CviJI	RGCY	4 cut(s)	44, 203, 224, 325
CviKI_1	RGCY	4 cut(s)	44, 203, 224, 325
EcoRI	GAATTC	1 cut(s)	24
EcoT22I	ATGCAT	2 cut(s)	6, 348
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	50, 388
FaiI	YATR	7 cut(s)	48, 141, 161, 176, 206, 344, 386
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	2 cut(s)	46, 384
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	142, 176
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	29, 318
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	246
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	50, 388
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	50, 74, 304, 422
HphI	GGTGA	2 cut(s)	194, 311
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	47, 282, 426
HpyAV	CCTTC	2 cut(s)	204, 424
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	4, 122, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	50, 388
HspAI	GCGC	1 cut(s)	243
LpnPI	CCDG	3 cut(s)	66, 295, 353
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	13, 120
MaeI	CTAG	2 cut(s)	29, 318
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	11, 270, 370
MluCI	AATT	4 cut(s)	24, 144, 195, 361
MlyI	GAGTC	2 cut(s)	44, 313
Mph1103I	ATGCAT	2 cut(s)	6, 348
MseI	TTAA	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	50, 388
NsiI	ATGCAT	2 cut(s)	6, 348
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	22
PagI	TCATGA	1 cut(s)	46
PciI	ACATGT	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	74, 422
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	44, 312
PpsI	GAGTC	2 cut(s)	44, 312
PscI	ACATGT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	44, 313
SetI	ASST	7 cut(s)	46, 85, 205, 215, 237, 327, 416
SfaNI	GCATC	2 cut(s)	13, 120
SfuI	TTCGAA	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	4 cut(s)	24, 144, 195, 361
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	29, 318
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	7, 22, 336
TasI	AATT	4 cut(s)	24, 144, 195, 361
TfiI	GAWTC	2 cut(s)	74, 422
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	24, 144
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	2 cut(s)	29, 318
Zsp2I	ATGCAT	2 cut(s)	6, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.