Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000161.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

18096 .. 18776

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000161.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggatcaaagtaattcagattcatcttcagatgatgtgaatgaggaattttggaatcttgccaattcatcattagacgaagaattgatgaatttgcagattattgctctacaagagaatggaagaagaaggcatcagcgctcagttcctggtcgcatatataaagatagacaacgatttcaaggctaccaaacactctacaatgattattttgctgaaaatccaatccatgaagaagttgtatttcggaggagagattcaacaggccgtcttgggttatcgtctcttcaaaaggttactgctgcaatgaggatgcttgcctacggaattggggcagatactatggatgactatcttagaattggtgaaaccactacaattgaagctatgagaaggtttgtccaagccgttattgatgtatttggcgctgaatacttaaaaagaccaacttctgatgatatttccagattgctattgattggtgagagtcatgggtttcgaggaatgcttggtagtatcgattatatgcattggaagtggaagaattgtccgttgcttggaaatgtatgttttcttgtggagatcattgtgaacctttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

200

Amino Acids

23.13

Weight (kDa)

5.42

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	47, 91
AcuI	CTGAAG	1 cut(s)	12
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	182, 261, 290, 383
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	47, 91
AspLEI	GCGC	2 cut(s)	141, 428
AsuHPI	GGTGA	2 cut(s)	377, 494
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	252, 392
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	288
BfoI	RGCGCY	2 cut(s)	142, 429
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	142, 303
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	519
BseGI	GGATG	2 cut(s)	318, 352
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	4, 582
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	155
BspDI	ATCGAT	1 cut(s)	519
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	312
BssMI	GATC	2 cut(s)	4, 582
Bst2UI	CCWGG	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	142, 356
BstF5I	GGATG	2 cut(s)	318, 352
BstH2I	RGCGCY	2 cut(s)	142, 429
BstHHI	GCGC	2 cut(s)	141, 428
BstKTI	GATC	2 cut(s)	7, 585
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	4, 582
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	267
BsuTUI	ATCGAT	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	318, 352
Cac8I	GCNNGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	2 cut(s)	141, 428
ClaI	ATCGAT	1 cut(s)	519
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	2 cut(s)	230, 491
CviJI	RGCY	4 cut(s)	186, 267, 386, 407
CviKI_1	RGCY	4 cut(s)	186, 267, 386, 407
DdeI	CTNAG	2 cut(s)	142, 356
DpnI	GATC	2 cut(s)	6, 584
DpnII	GATC	2 cut(s)	4, 582
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco47III	AGCGCT	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	2 cut(s)	233, 494
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	2 cut(s)	229, 490
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	325, 359
Fsp4HI	GCNGC	1 cut(s)	303
GlaI	GCGC	2 cut(s)	140, 427
GluI	GCNGC	1 cut(s)	303
HaeII	RGCGCY	2 cut(s)	142, 429
HaeIII	GGCC	1 cut(s)	267
HhaI	GCGC	2 cut(s)	141, 428
Hin1II	CATG	2 cut(s)	233, 494
Hin6I	GCGC	2 cut(s)	139, 426
HinP1I	GCGC	2 cut(s)	139, 426
HinfI	GANTC	4 cut(s)	20, 55, 257, 487
HphI	GGTGA	2 cut(s)	377, 494
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	4 cut(s)	19, 31, 249, 454
Hpy188III	TCNNGA	1 cut(s)	465
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	2 cut(s)	123, 387
HpyCH4V	TGCA	3 cut(s)	97, 305, 529
HpyF3I	CTNAG	2 cut(s)	142, 356
Hsp92II	CATG	2 cut(s)	233, 494
HspAI	GCGC	2 cut(s)	139, 426
Kzo9I	GATC	2 cut(s)	4, 582
LpnPI	CCDG	4 cut(s)	135, 162, 249, 478
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	142, 303
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	6, 584
MboI	GATC	2 cut(s)	4, 582
MboII	GAAGA	7 cut(s)	18, 92, 135, 138, 245, 278, 553
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	9 cut(s)	13, 47, 64, 83, 91, 327, 360, 378, 544
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	4 cut(s)	37, 243, 303, 494
Mph1103I	ATGCAT	1 cut(s)	531
MseI	TTAA	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	4, 582
NlaIII	CATG	2 cut(s)	233, 494
NsiI	ATGCAT	1 cut(s)	531
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	20, 55, 257
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	4, 582
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	4 cut(s)	297, 388, 398, 597
SfaNI	GCATC	2 cut(s)	142, 303
Sse9I	AATT	9 cut(s)	13, 47, 64, 83, 91, 327, 360, 378, 544
StyD4I	CCNGG	1 cut(s)	148
TaqI	TCGA	2 cut(s)	499, 519
TasI	AATT	9 cut(s)	13, 47, 64, 83, 91, 327, 360, 378, 544
TfiI	GAWTC	3 cut(s)	20, 55, 257
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	4 cut(s)	12, 57, 104, 246
TspGWI	ACGGA	2 cut(s)	339, 540
XapI	RAATTY	2 cut(s)	47, 91
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.