Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004618.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

181456 .. 181794

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004618.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggatcaaaaaatttcagattcatcttcagatgctgcaaatgaggaattttggggtcttgccaattcatcatcagacgaagaattgatgaatctgcatattactgctctacaagagaagggaagaagaagacgccggggctcaattcctggtcgcatatataaagatagacaacgattgcaaggccacgaaacactgtacaatgattattttgctgaaaatcctgttcatgaagaagttgtatttcggagaaggtttcggatgcatcgacatatttttcttcgaattctagctgcagtagaagctcatgacgcctatgagttaaagtttattaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

112

Amino Acids

13.3

Weight (kDa)

7.03

Isoelectric Point (pI)

80.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	12, 47, 285
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	133, 312
AfaI	GTAC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	293, 305
AluI	AGCT	2 cut(s)	293, 305
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	35, 293
ApoI	RAATTY	3 cut(s)	12, 47, 285
AsuC2I	CCSGG	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	22, 280
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	36, 294
BlsI	GCNGC	2 cut(s)	37, 295
Bme1390I	CCNGG	2 cut(s)	137, 150
BmrFI	CCNGG	2 cut(s)	137, 150
BmsI	GCATC	3 cut(s)	22, 252, 274
BpiI	GAAGAC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	133, 312
BsaJI	CCNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	22, 280
BshFI	GGCC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	186
BspHI	TCATGA	2 cut(s)	229, 307
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	283
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	2 cut(s)	133, 312
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	198
BstACI	GRCGYC	2 cut(s)	133, 312
BstAUI	TGTACA	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 311
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	135, 148
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	22, 280
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	2 cut(s)	229, 307
CseI	GACGC	2 cut(s)	141, 320
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	230, 308
CviJI	RGCY	4 cut(s)	141, 186, 293, 305
CviKI_1	RGCY	4 cut(s)	141, 186, 293, 305
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco24I	GRGCYC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	2 cut(s)	233, 311
FaiI	YATR	8 cut(s)	99, 158, 160, 162, 231, 273, 309, 318
FatI	CATG	2 cut(s)	229, 307
Fnu4HI	GCNGC	2 cut(s)	36, 294
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	36, 294
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	36, 294
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	2 cut(s)	141, 320
Hin1I	GRCGYC	2 cut(s)	133, 312
Hin1II	CATG	2 cut(s)	233, 311
HinfI	GANTC	2 cut(s)	20, 91
HpaII	CCGG	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	19, 31, 76, 249, 261
Hpy188III	TCNNGA	2 cut(s)	230, 308
HpyAV	CCTTC	2 cut(s)	112, 246
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	38, 97, 181, 265, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 311
Hsp92I	GRCGYC	2 cut(s)	133, 312
Hsp92II	CATG	2 cut(s)	233, 311
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	135, 149, 162, 237
Lsp1109I	GCAGC	2 cut(s)	22, 280
LweI	GCATC	3 cut(s)	22, 252, 274
MaeI	CTAG	1 cut(s)	290
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	7 cut(s)	18, 92, 135, 138, 141, 245, 272
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	6 cut(s)	12, 47, 64, 83, 144, 285
MnlI	CCTC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	2 cut(s)	323, 333
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	2 cut(s)	137, 150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	302, 311
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	233, 311
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	283
PagI	TCATGA	2 cut(s)	229, 307
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	20, 91
PkrI	GCNGC	2 cut(s)	37, 295
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	323, 333
SatI	GCNGC	2 cut(s)	36, 294
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	137, 150
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	257, 295, 307
SfaNI	GCATC	3 cut(s)	22, 252, 274
SfcI	CTRYAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	283
Sse9I	AATT	6 cut(s)	12, 47, 64, 83, 144, 285
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	135, 148
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	268, 283
TasI	AATT	6 cut(s)	12, 47, 64, 83, 144, 285
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	20, 91
Tru1I	TTAA	2 cut(s)	323, 333
Tru9I	TTAA	2 cut(s)	323, 333
TscAI	CASTG	1 cut(s)	201
TseI	GCWGC	2 cut(s)	35, 293
TspDTI	ATGAA	5 cut(s)	12, 57, 104, 218, 246
TspRI	CASTG	1 cut(s)	201
XapI	RAATTY	3 cut(s)	12, 47, 285
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.