Rorug05G0228100

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005193
Physical Location & Seq
Forward (+)
23684568 .. 23684972
405 bp
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UTR
Exon/CDS
Intron
Rorug05G0228100.1

Sequence Viewer

Length: 405 bp
ATGGCTCCAGATTATGTCACTAAAAAGAAGGCGAGTAAGGATACTGATATCTTCAGCTTCGGAGTTGTTGCGTTGGAAATAGCATGTGGAAGAAAACCCATTGACCACAGGTTGGAAAGTGATAAAGTCAATATGAGGCAATGGGTTTGGGAACTTTACGAAGGAGGGAAAGTCATTGAAGCAGCTGATCCGAAACTGGGTGAGACTTATGATAGGAGGCAGATGGAGCGTTTGTTGATTGTTGGGTTGTGGTGTTCTCATCCAGATAAAAGTACACGGCCTGGAATAGAACAAGTGATTGATGTGCTTAACTTCAAGGACGTACACCCATTTCCTAATATTCCAGCACCTGCAGAGAGTTCTGTTTATCTTACTAGTTCTGATGAATACCAGATCGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

134

Amino Acids

15.25

Weight (kDa)

5.19

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 100 8.4e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 112
AclWI GGATC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 2 cut(s) 274, 324
AfiI CCNNNNNNNGG 2 cut(s) 112, 197
AgsI TTSAA 2 cut(s) 179, 316
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 2 cut(s) 57, 185
AluI AGCT 2 cut(s) 57, 185
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 212
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 358
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 197
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 112, 197
BseMI GCAATG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 112, 197
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 187, 393
BspANI GGCC 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 201
BssMI GATC 2 cut(s) 187, 393
Bst2UI CCWGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 190, 396
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 187, 393
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 194
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 350
Csp6I GTAC 2 cut(s) 273, 323
CviAII CATG 1 cut(s) 84
CviJI RGCY 4 cut(s) 5, 57, 185, 280
CviKI_1 RGCY 4 cut(s) 5, 57, 185, 280
CviQI GTAC 2 cut(s) 273, 323
DpnI GATC 2 cut(s) 189, 395
DpnII GATC 2 cut(s) 187, 393
Eco32I GATATC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 49
FaeI CATG 1 cut(s) 87
FaiI YATR 4 cut(s) 15, 85, 134, 210
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 375
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 1 cut(s) 87
HinfI GANTC 1 cut(s) 398
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 275, 325
Hpy188I TCNGA 3 cut(s) 62, 192, 382
Hpy188III TCNNGA 3 cut(s) 8, 263, 402
Hpy8I GTNNAC 2 cut(s) 275, 325
HpyAV CCTTC 2 cut(s) 22, 155
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 87
Kzo9I GATC 2 cut(s) 187, 393
LmnI GCTCC 2 cut(s) 10, 226
LpnPI CCDG 8 cut(s) 21, 94, 182, 267, 276, 294, 357, 363
Lsp1109I GCAGC 1 cut(s) 194
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 189, 395
MboI GATC 2 cut(s) 187, 393
MboII GAAGA 2 cut(s) 43, 102
MmeI TCCRAC 2 cut(s) 54, 93
MnlI CCTC 3 cut(s) 129, 158, 210
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 2 cut(s) 187, 393
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 274, 324
RsaNI GTAC 2 cut(s) 273, 323
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 187, 393
ScrFI CCNGG 1 cut(s) 282
SetI ASST 5 cut(s) 59, 113, 187, 324, 352
SfcI CTRYAG 1 cut(s) 351
SpeI ACTAGT 1 cut(s) 374
SspI AATATT 1 cut(s) 340
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 280
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 396
TatI WGTACW 1 cut(s) 272
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 399
Van91I CCANNNNNTGG 1 cut(s) 112
XceI RCATGY 1 cut(s) 87
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.