Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001477.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

38877 .. 39212

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001477.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgaggatgcttgcctatggaattagggcagatgttgtggatgactatcttagaattggtgaaaccactgcaattgaagctatgagaaggtttattcaagctgttattgaagtttttggcgctgaatacttaagaagaccaacttcttatgatatttccagattgctatcgattggtgagacttgtgggtttcgaggaatgcttggtagtatcaattgtatgcattggaggtggaagaattgtccggttgctgggaaatgtatgttttctcgtggagatcatcgtgaaccttcattgattcttgaagctattgcttcacaggatctttggatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

111

Amino Acids

12.72

Weight (kDa)

7.69

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	77, 98, 110, 305
AluBI	AGCT	3 cut(s)	80, 101, 308
AluI	AGCT	3 cut(s)	80, 101, 308
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	71, 188
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	170
BsaBI	GATNNNNATC	2 cut(s)	45, 166
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse8I	GATNNNNATC	2 cut(s)	45, 166
BseCI	ATCGAT	1 cut(s)	170
BseGI	GGATG	2 cut(s)	12, 46
BseJI	GATNNNNATC	2 cut(s)	45, 166
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	277, 322
BspDI	ATCGAT	1 cut(s)	170
BspPI	GGATC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	130
BssMI	GATC	2 cut(s)	277, 322
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	12, 46
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	2 cut(s)	280, 325
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	277, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu15I	ATCGAT	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	12, 46
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviJI	RGCY	3 cut(s)	80, 101, 308
CviKI_1	RGCY	3 cut(s)	80, 101, 308
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	279, 324
DpnII	GATC	2 cut(s)	277, 322
EcoT22I	ATGCAT	1 cut(s)	225
FaiI	YATR	6 cut(s)	18, 83, 150, 221, 263, 334
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FokI	GGATG	2 cut(s)	19, 53
GlaI	GCGC	1 cut(s)	121
GsaI	CCCAGC	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	71, 188
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	159, 284, 302
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	81, 300
HpyCH4V	TGCA	2 cut(s)	71, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	277, 322
LpnPI	CCDG	4 cut(s)	172, 237, 258, 305
MalI	GATC	2 cut(s)	279, 324
MboI	GATC	2 cut(s)	277, 322
MboII	GAAGA	2 cut(s)	147, 247
MfeI	CAATTG	2 cut(s)	72, 214
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	5 cut(s)	21, 54, 72, 214, 238
MnlI	CCTC	2 cut(s)	188, 222
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	130
MspI	CCGG	1 cut(s)	245
MunI	CAATTG	2 cut(s)	72, 214
Mva1269I	GAATGC	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	277, 322
NsiI	ATGCAT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	277, 322
SetI	ASST	6 cut(s)	82, 92, 103, 233, 292, 310
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	5 cut(s)	21, 54, 72, 214, 238
TaqI	TCGA	2 cut(s)	170, 193
TasI	AATT	5 cut(s)	21, 54, 72, 214, 238
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.