Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009354.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 415

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009354.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

gaacatggattgaggttgtttcagattcatcttcagatgctgcaaatgaggaattttgggatcttgccaattcatcatcagatgaagaattgatgaatctgcagattactgctctacaagagatgggaagaagaagacgccggggctcaattcctggtcgcatttataaagatagacaacgattgcaaggccacgaaacactctacaatgattattttgctgcaaatcctgttcatgaagaagttgtatttcggagaaggtttcggatgcatcgacatctttttcttcgaattctagctgcagtagaagctcgtgactcctattttgttcaaaaatgtcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

113

Amino Acids

13.46

Weight (kDa)

7.91

Isoelectric Point (pI)

83.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	52, 290
AcuI	CTGAAG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	298, 310
AluI	AGCT	2 cut(s)	298, 310
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	3 cut(s)	40, 220, 298
ApoI	RAATTY	2 cut(s)	52, 290
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AsuC2I	CCSGG	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	27, 207, 285
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	295
BfmI	CTRYAG	2 cut(s)	100, 299
BisI	GCNGC	3 cut(s)	41, 221, 299
BlsI	GCNGC	3 cut(s)	42, 222, 300
Bme1390I	CCNGG	2 cut(s)	142, 155
BmrFI	CCNGG	2 cut(s)	142, 155
BmsI	GCATC	3 cut(s)	27, 257, 279
BpiI	GAAGAC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	27, 207, 285
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	141
BsnI	GGCC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	234
BspMAI	CTGCAG	2 cut(s)	104, 303
BspPI	GGATC	1 cut(s)	68
BspT104I	TTCGAA	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	140, 153
BstSFI	CTRYAG	2 cut(s)	100, 299
BstV1I	GCAGC	3 cut(s)	27, 207, 285
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	272
CaiI	CAGNNNCTG	1 cut(s)	40
CciI	TCATGA	1 cut(s)	234
CseI	GACGC	1 cut(s)	146
CviAII	CATG	2 cut(s)	5, 235
CviJI	RGCY	4 cut(s)	146, 191, 298, 310
CviKI_1	RGCY	4 cut(s)	146, 191, 298, 310
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	8, 238
FaiI	YATR	3 cut(s)	6, 167, 236
FatI	CATG	2 cut(s)	4, 234
Fnu4HI	GCNGC	3 cut(s)	41, 221, 299
FokI	GGATG	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	41, 221, 299
FspBI	CTAG	1 cut(s)	295
GluI	GCNGC	3 cut(s)	41, 221, 299
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	8, 238
HinfI	GANTC	3 cut(s)	25, 96, 316
HpaII	CCGG	1 cut(s)	141
Hpy188I	TCNGA	5 cut(s)	24, 36, 81, 254, 266
Hpy188III	TCNNGA	2 cut(s)	235, 313
HpyAV	CCTTC	1 cut(s)	251
HpyCH4V	TGCA	6 cut(s)	43, 102, 186, 223, 270, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	8, 238
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	140, 154, 167, 242
Lsp1109I	GCAGC	3 cut(s)	27, 207, 285
LweI	GCATC	3 cut(s)	27, 257, 279
MaeI	CTAG	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	7 cut(s)	23, 97, 140, 143, 146, 250, 277
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	5 cut(s)	52, 69, 88, 149, 290
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	2 cut(s)	6, 42
Mph1103I	ATGCAT	1 cut(s)	272
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	142, 155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	2 cut(s)	8, 238
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	288
PagI	TCATGA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	25, 96
PkrI	GCNGC	3 cut(s)	42, 222, 300
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PstI	CTGCAG	2 cut(s)	104, 303
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	60
SatI	GCNGC	3 cut(s)	41, 221, 299
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	142, 155
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	4 cut(s)	17, 262, 300, 312
SfaNI	GCATC	3 cut(s)	27, 257, 279
SfcI	CTRYAG	2 cut(s)	100, 299
SfuI	TTCGAA	1 cut(s)	288
Sse9I	AATT	5 cut(s)	52, 69, 88, 149, 290
SspMI	CTAG	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	140, 153
TaqI	TCGA	3 cut(s)	273, 288, 339
TasI	AATT	5 cut(s)	52, 69, 88, 149, 290
TfiI	GAWTC	2 cut(s)	25, 96
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	40, 220, 298
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	6 cut(s)	17, 62, 98, 109, 223, 251
XapI	RAATTY	2 cut(s)	52, 290
XspI	CTAG	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.