Rh6AG379500

Cactus-binding C-terminus of cactin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005193
Physical Location & Seq
Forward (+)
57814532 .. 57815031
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG379500.1

Sequence Viewer

Length: 237 bp
ATGCAAGCTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGAGGAAGAAATGGTGCTGCTTGCCAGAGAACGTGCTCTGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGAAGAGTTCCACGTTGATCAAAGCAAAATGAGGTCAGAGATCAGATTGCGTGAAGGGCGTATCAAGCCAATTGATGTACTTTCCAAGCATCTTGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CactinC_cactus Cactin_mid

Protein Analysis

78

Amino Acids

9.44

Weight (kDa)

5.95

Isoelectric Point (pI)

68.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cactin_mid PF10312 31 - 76 2.4e-16 Conserved mid region of cactin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 2 cut(s) 8, 59
AluI AGCT 2 cut(s) 8, 59
Alw21I GWGCWC 2 cut(s) 49, 103
ApeKI GCWGC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 49, 103
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 224
BclI TGATCA 1 cut(s) 151
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 49, 103
BslI CCNNNNNNNGG 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 49, 103
Bsp143I GATC 2 cut(s) 151, 174
BspCNI CTCAG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 125
BssMI GATC 2 cut(s) 151, 174
Bst6I CTCTTC 2 cut(s) 23, 132
BstC8I GCNNGC 2 cut(s) 6, 87
BstDEI CTNAG 2 cut(s) 9, 108
BstKTI GATC 2 cut(s) 154, 177
BstMBI GATC 2 cut(s) 151, 174
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstV1I GCAGC 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 6, 87
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 65
CviJI RGCY 5 cut(s) 8, 59, 107, 202, 234
CviKI_1 RGCY 5 cut(s) 8, 59, 107, 202, 234
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 9, 108
DpnI GATC 2 cut(s) 153, 176
DpnII GATC 2 cut(s) 151, 174
Eam1104I CTCTTC 2 cut(s) 23, 132
EarI CTCTTC 2 cut(s) 23, 132
FaeI CATG 1 cut(s) 68
FaiI YATR 1 cut(s) 66
FatI CATG 1 cut(s) 64
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 172, 179
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 27, 182
HpyCH4IV ACGT 2 cut(s) 97, 147
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
HpyF3I CTNAG 2 cut(s) 9, 108
HpySE526I ACGT 2 cut(s) 97, 147
Hsp92II CATG 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 174
LpnPI CCDG 3 cut(s) 89, 103, 106
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 232
MaeII ACGT 2 cut(s) 97, 147
MalI GATC 2 cut(s) 153, 176
MboI GATC 2 cut(s) 151, 174
MboII GAAGA 4 cut(s) 40, 83, 146, 149
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 49, 103
MluCI AATT 1 cut(s) 204
MnlI CCTC 3 cut(s) 31, 61, 159
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 228
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NdeII GATC 2 cut(s) 151, 174
NlaIII CATG 1 cut(s) 68
PkrI GCNGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 151, 174
SduI GDGCHC 2 cut(s) 49, 103
SetI ASST 6 cut(s) 10, 24, 61, 100, 150, 170
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 1 cut(s) 204
TaiI ACGT 2 cut(s) 100, 150
TasI AATT 1 cut(s) 204
TatI WGTACW 1 cut(s) 211
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.