Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006417.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Reverse (-)

74980 .. 75531

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006417.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaatctgcagattgaagctctacaagagaaggggagaagaagacgtcggggctcaattcctggtcgcaaatataaagatagacaattactgcaaggccacgaaacactgttcaaagattattttgcagaaaatcctgttcatgaagaagttgtatttcggagaaggtttcggatgcatcaagctcttttaattaatattctagctgcagtagaagctcatgactcatattttgttcaaaaaagggactcagcaggacgtcttgggctatcatttctacaaaaagttaccgctgcaatgaggatgcttgcgtatggaattggggcagatgctgtggatgactatcttagaatctgtgaaagcactgcaattgaagctatgaaaaggtttgtccaagctgttatctctgtatttggagctaaatacttaagaaagccaacttctgatgatatttccagattgttattgattggtgagagtcgtggatttcctggaatgcttggtagtatcgattgtatgcactggaagtggaagaattgtccggttgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

183

Amino Acids

20.99

Weight (kDa)

9.77

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	49, 262
AciI	CCGC	1 cut(s)	291
AcyI	GRCGYC	2 cut(s)	46, 259
AflII	CTTAAG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	17, 115, 239, 374
AjnI	CCWGG	2 cut(s)	61, 490
AluBI	AGCT	7 cut(s)	20, 185, 206, 218, 377, 398, 419
AluI	AGCT	7 cut(s)	20, 185, 206, 218, 377, 398, 419
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	206, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AseI	ATTAAT	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	193, 280
BciT130I	CCWGG	2 cut(s)	63, 492
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	8, 207
BfrI	CTTAAG	1 cut(s)	427
BisI	GCNGC	2 cut(s)	207, 294
BlsI	GCNGC	2 cut(s)	208, 295
Bme1390I	CCNGG	2 cut(s)	63, 492
BmrFI	CCNGG	2 cut(s)	63, 492
BmsI	GCATC	4 cut(s)	165, 187, 294, 319
BpiI	GAAGAC	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	46, 259
BsaWI	WCCGGW	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	63, 492
BseCI	ATCGAT	1 cut(s)	510
BseGI	GGATG	3 cut(s)	180, 309, 343
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	193, 280
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	510
BspHI	TCATGA	2 cut(s)	142, 220
BspMAI	CTGCAG	2 cut(s)	12, 211
BspTI	CTTAAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	527
BssNI	GRCGYC	2 cut(s)	46, 259
Bst2UI	CCWGG	2 cut(s)	63, 492
Bst4CI	ACNGT	1 cut(s)	111
BstACI	GRCGYC	2 cut(s)	46, 259
BstAFI	CTTAAG	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	250, 347
BstF5I	GGATG	3 cut(s)	180, 309, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 374
BstNI	CCWGG	2 cut(s)	63, 492
BstSCI	CCNGG	2 cut(s)	61, 490
BstSFI	CTRYAG	2 cut(s)	8, 207
BstV1I	GCAGC	2 cut(s)	193, 280
BstV2I	GAAGAC	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	180, 309, 343
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	107, 363, 520
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	2 cut(s)	142, 220
ClaI	ATCGAT	1 cut(s)	510
CviAII	CATG	3 cut(s)	143, 221, 549
DdeI	CTNAG	2 cut(s)	250, 347
Eco24I	GRGCYC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	61, 490
EcoT22I	ATGCAT	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	3 cut(s)	146, 224, 552
FaiI	YATR	8 cut(s)	75, 144, 222, 229, 315, 380, 518, 550
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	142, 220, 548
Fnu4HI	GCNGC	2 cut(s)	207, 294
FokI	GGATG	3 cut(s)	187, 316, 350
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	207, 294
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	207, 294
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	542
Hin1I	GRCGYC	2 cut(s)	46, 259
Hin1II	CATG	3 cut(s)	146, 224, 552
HinfI	GANTC	5 cut(s)	4, 224, 248, 351, 478
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	162, 174, 445
Hpy188III	TCNNGA	3 cut(s)	143, 221, 456
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	25, 159
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	2 cut(s)	46, 259
HpyCH4V	TGCA	9 cut(s)	10, 94, 128, 178, 209, 296, 368, 520, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 374
HpyF3I	CTNAG	2 cut(s)	250, 347
HpySE526I	ACGT	2 cut(s)	46, 259
Hsp92I	GRCGYC	2 cut(s)	46, 259
Hsp92II	CATG	3 cut(s)	146, 224, 552
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	8 cut(s)	48, 75, 150, 240, 469, 477, 504, 508
Lsp1109I	GCAGC	2 cut(s)	193, 280
LweI	GCATC	4 cut(s)	165, 187, 294, 319
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	46, 259
MaeIII	GTNAC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	51, 54, 158, 544
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	6 cut(s)	57, 86, 192, 318, 369, 535
MlyI	GAGTC	3 cut(s)	218, 242, 487
MnlI	CCTC	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	180
MseI	TTAA	3 cut(s)	191, 195, 428
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	427
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	63, 492
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	63, 492
MwoI	GCNNNNNNNGC	2 cut(s)	215, 374
NlaIII	CATG	3 cut(s)	146, 224, 552
NsiI	ATGCAT	1 cut(s)	180
PacI	TTAATTAA	1 cut(s)	195
PagI	TCATGA	2 cut(s)	142, 220
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	4, 351
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	208, 295
PleI	GAGTC	3 cut(s)	218, 242, 486
PpsI	GAGTC	3 cut(s)	218, 242, 486
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	61, 490
PspGI	CCWGG	2 cut(s)	61, 490
PstI	CTGCAG	2 cut(s)	12, 211
PstNI	CAGNNNCTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	191, 195, 428
SatI	GCNGC	2 cut(s)	207, 294
SchI	GAGTC	3 cut(s)	218, 242, 487
ScrFI	CCNGG	2 cut(s)	63, 492
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	4 cut(s)	165, 187, 294, 319
SfcI	CTRYAG	2 cut(s)	8, 207
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	6 cut(s)	57, 86, 192, 318, 369, 535
SsiI	CCGC	1 cut(s)	291
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	61, 490
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	2 cut(s)	49, 262
TaqI	TCGA	1 cut(s)	510
TasI	AATT	6 cut(s)	57, 86, 192, 318, 369, 535
TfiI	GAWTC	2 cut(s)	4, 351
Tru1I	TTAA	3 cut(s)	191, 195, 428
Tru9I	TTAA	3 cut(s)	191, 195, 428
TscAI	CASTG	3 cut(s)	114, 370, 527
TseI	GCWGC	2 cut(s)	206, 293
TspDTI	ATGAA	4 cut(s)	17, 131, 159, 395
TspRI	CASTG	3 cut(s)	114, 370, 527
Vha464I	CTTAAG	1 cut(s)	427
VspI	ATTAAT	1 cut(s)	195
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	2 cut(s)	47, 260
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.