Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041104.1

Orthogroup ID

OG0005193

Physical Location & Seq

Genomic Coordinates Forward (+)

106 .. 381

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041104.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgcatcaacatctttttcttcaaattctagctgcagtggaagctcatgactcctattttgttcaaaaaagagattcagcaggccgtcttgagttatcgcctctacaaaaggttactactgctatgaggatgcttgcctatggaattaaggtagatgttgtggatgactatcttagaattggtgaaaccactgcaattgaagctatgagaaggtttgtccaagccgttattgatgtatttggggttgaatacttaagaagatcaactaacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

91

Amino Acids

10.46

Weight (kDa)

6.83

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38381
malus_domestica	MD12G1102200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0377901 RchiOBHm_Chr3g0473411 RchiOBHm_Chr4g0394851 RchiOBHm_Chr5g0072821
rosa_laevigata	RLG00000024152 RLG00000029359
rosa_multiflora	Rmu_sc0000161.1_g000006 Rmu_sc0000762.1_g000046 Rmu_sc0001477.1_g000010 Rmu_sc0002503.1_g000021 Rmu_sc0002532.1_g000002 Rmu_sc0004618.1_g000047 Rmu_sc0005220.1_g000041 Rmu_sc0006417.1_g000008 Rmu_sc0009354.1_g000001 Rmu_sc0019463.1_g000004 Rmu_sc0041104.1_g000001
rosa_rugosa	Rorug03G0313500 Rorug05G0228100 Rorug05G0457800
rosa_samantha	Rh2CG275800 Rh3CG276600 Rh5AG038300 Rh5CG040900 Rh6AG379500 Rh7BG387300 Rh7CG204200
rosa_wichuraiana	Rw5G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	23, 65, 200, 248
AluBI	AGCT	3 cut(s)	32, 44, 203
AluI	AGCT	3 cut(s)	32, 44, 203
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AsuHPI	GGTGA	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	2 cut(s)	69, 209
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	253
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmsI	GCATC	2 cut(s)	13, 120
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	168
BseGI	GGATG	2 cut(s)	135, 169
BseJI	GATNNNNATC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	253
BssMI	GATC	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	82, 135
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	135, 169
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 200
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	135, 169
BtsI	GCAGTG	2 cut(s)	42, 189
BtsIMutI	CAGTG	2 cut(s)	42, 189
Cac8I	GCNNGC	2 cut(s)	82, 135
CciI	TCATGA	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	5 cut(s)	32, 44, 84, 203, 224
CviKI_1	RGCY	5 cut(s)	32, 44, 84, 203, 224
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	50
FaiI	YATR	4 cut(s)	48, 125, 141, 206
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	142, 176
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	2 cut(s)	50, 74
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	2 cut(s)	47, 89
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	4, 35, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 200
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	260
LpnPI	CCDG	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	13, 120
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	2 cut(s)	11, 270
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	4 cut(s)	24, 144, 177, 195
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	111, 120
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	147, 254
MspCI	CTTAAG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	41, 200
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	147, 254
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	44
SetI	ASST	6 cut(s)	34, 46, 114, 153, 205, 215
SfaNI	GCATC	2 cut(s)	13, 120
SfcI	CTRYAG	1 cut(s)	33
SgeI	CNNG	6 cut(s)	41, 59, 93, 101, 146, 233
SmlI	CTYRAG	2 cut(s)	89, 253
SmoI	CTYRAG	2 cut(s)	89, 253
Sse9I	AATT	4 cut(s)	24, 144, 177, 195
SspMI	CTAG	1 cut(s)	29
TasI	AATT	4 cut(s)	24, 144, 177, 195
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	147, 254
Tru9I	TTAA	2 cut(s)	147, 254
TscAI	CASTG	2 cut(s)	42, 196
TseI	GCWGC	1 cut(s)	32
TspRI	CASTG	2 cut(s)	42, 196
Vha464I	CTTAAG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	24
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.