RchiOBHm_Chr6g0254981

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003703
Physical Location & Seq
Reverse (-)
9916829 .. 9921003
4175 bp
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UTR
Exon/CDS
Intron
PRQ22872

Sequence Viewer

Length: 273 bp
ATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCCGAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGCATGGCTCTGTGTATAAGCTTGCGTTTGGACCGAAAGGATTTGTTGTGGTATATATCAGATCCTATTGTTGCCGAGAATTGGTGTATTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

8.65

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 11 - 59 2.3e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 256
AhlI ACTAGT 1 cut(s) 106
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 236
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 231
BssMI GATC 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 9, 198
BstDEI CTNAG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 9, 198
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 90
CviAII CATG 4 cut(s) 32, 57, 161, 179
CviJI RGCY 5 cut(s) 74, 117, 183, 196, 269
CviKI_1 RGCY 5 cut(s) 74, 117, 183, 196, 269
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 4 cut(s) 35, 60, 164, 182
FaiI YATR 9 cut(s) 33, 58, 153, 162, 170, 180, 192, 229, 231
FatI CATG 4 cut(s) 31, 56, 160, 178
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 35, 60, 164, 182
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 19, 43, 236
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 4 cut(s) 35, 60, 164, 182
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 236
LpnPI CCDG 2 cut(s) 99, 126
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 23, 65
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MflI RGATCY 1 cut(s) 236
MluCI AATT 4 cut(s) 37, 44, 165, 254
MnlI CCTC 1 cut(s) 124
MseI TTAA 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 236
NlaIII CATG 4 cut(s) 35, 60, 164, 182
NmeAIII GCCGAG 1 cut(s) 143
PfeI GAWTC 1 cut(s) 14
PsiI TTATAA 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspPI GGNCC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 271
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 135, 145, 198
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 4 cut(s) 37, 44, 165, 254
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 112
TaiI ACGT 1 cut(s) 145
TaqII GACCGA 1 cut(s) 223
TasI AATT 4 cut(s) 37, 44, 165, 254
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 37
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.