Rh4BG015100

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003703
Physical Location & Seq
Forward (+)
2135646 .. 2155018
19373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG015100.1

Sequence Viewer

Length: 984 bp
ATGGATCCCAAGTTGAGGATTCTTCAGTCCTGCAATGGCCAGCTCCTTCTCTGCCTTTGCGAGACAATGAAAGAAAGAAGACATGATTCGGCCCGACTCTGGTGCGAAGCTTTCGAAGCCCTAAGTCGGAGATTTGTCTTCGAATCTGGTGTTGAGTTCGGGTTCTTCACAAATCACTCTTTTGATTTGGGGCTGACGGAAGATTTCAGTGGATTGTTGTTGGACGAGAACCTGGTGGCACAAGCTATCAAGCTACTGATAGAAACGAAACATGTTCTAATATCAAATTTATCAGCTATCGGAAATGGAACGCCTGAAGAATTAGCAGAACAGTTCTGGTTTTCAGCTGCTAAGCTGAAGATCACTGCTAAGGCTTCGGAAGTTGCGCATACTATGTATGCTGTTCTTAATTATATATCAGTTATGGTGGTGAAGATAGTGGTCATCAGCAGTATTTTATCTGGGATATCAGCTGTGAGGAGGTTCATACCAAAAGCTTGCCCAAAGGCTGAAGTTAAACCCGACCTGGAGGAGGAAGAGCAAGCTAGTCATGCTGAAAAGGAGAGGGAGTTGCTCAGACATTTCCATGAACAATCTTTGAGGGCAAAGCTGAAAAACGAAAAGAAAGAACAGCCTTGGTCTAAAGAACAAACTAGATGTTTATACCTGTTTCCTCCAACTGCTGCTACTGTGAGCTCCGCCCTACTCTTGGGTATATGCAGTCTCCCTGATACCATATTTAGAAATGCTGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTACTGATTTGGCAAAACTAGTTCCTGGCAGAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGTTTTTGCGAAGGCAAGATGTAAACCCCAAGCTTAGTTTAAGTGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

327

Amino Acids

36.68

Weight (kDa)

6.76

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 245 - 311 3.7e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 926
Acc16I TGCGCA 1 cut(s) 387
AciI CCGC 1 cut(s) 699
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 2 cut(s) 286, 793
AcuI CTGAAG 4 cut(s) 8, 336, 377, 531
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 5 cut(s) 15, 99, 126, 532, 709
AflIII ACRYGT 1 cut(s) 271
AhlI ACTAGT 1 cut(s) 862
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 3 cut(s) 231, 525, 868
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 2 cut(s) 56, 728
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 37, 90
ApeKI GCWGC 2 cut(s) 347, 683
ApoI RAATTY 2 cut(s) 286, 793
AspLEI GCGC 2 cut(s) 388, 763
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 442
AsuII TTCGAA 2 cut(s) 114, 141
BalI TGGCCA 1 cut(s) 39
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 2 cut(s) 85, 130
Bbv12I GWGCWC 1 cut(s) 698
BbvI GCAGC 2 cut(s) 334, 670
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 3 cut(s) 233, 527, 870
BcoDI GTCTC 2 cut(s) 56, 728
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 3 cut(s) 546, 654, 863
BfoI RGCGCY 1 cut(s) 764
BisI GCNGC 2 cut(s) 348, 684
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 2 cut(s) 349, 685
Bme1390I CCNGG 3 cut(s) 233, 527, 870
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 233, 527, 870
BmsI GCATC 1 cut(s) 883
BpiI GAAGAC 2 cut(s) 85, 130
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 2 cut(s) 114, 141
BsaJI CCNNGG 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 5 cut(s) 15, 99, 126, 532, 709
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 3 cut(s) 233, 527, 870
BseDI CCNNGG 1 cut(s) 635
BseLI CCNNNNNNNGG 5 cut(s) 15, 99, 126, 532, 709
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 589, 876
BseRI GAGGAG 2 cut(s) 493, 545
BseXI GCAGC 2 cut(s) 334, 670
BshFI GGCC 2 cut(s) 39, 92
BsiHKAI GWGCWC 1 cut(s) 698
BslI CCNNNNNNNGG 5 cut(s) 15, 99, 126, 532, 709
BsmAI GTCTC 2 cut(s) 56, 728
BsnI GGCC 2 cut(s) 39, 92
Bsp119I TTCGAA 2 cut(s) 114, 141
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 2 cut(s) 4, 360
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 1 cut(s) 699
BspANI GGCC 2 cut(s) 39, 92
BspCNI CTCAG 2 cut(s) 588, 877
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 531
BspT104I TTCGAA 2 cut(s) 114, 141
BsrDI GCAATG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 2 cut(s) 4, 360
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 3 cut(s) 233, 527, 870
Bst4CI ACNGT 2 cut(s) 333, 691
Bst6I CTCTTC 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 902
BstBI TTCGAA 2 cut(s) 114, 141
BstC8I GCNNGC 4 cut(s) 41, 499, 543, 765
BstDEI CTNAG 6 cut(s) 122, 351, 369, 575, 885, 965
BstENI CCTNNNNNAGG 1 cut(s) 530
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 2 cut(s) 388, 763
BstKTI GATC 2 cut(s) 7, 363
BstMAI GTCTC 2 cut(s) 56, 728
BstMBI GATC 2 cut(s) 4, 360
BstMWI GCNNNNNNNGC 3 cut(s) 116, 551, 902
BstNI CCWGG 3 cut(s) 233, 527, 870
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 231, 525, 868
BstV1I GCAGC 2 cut(s) 334, 670
BstV2I GAAGAC 2 cut(s) 85, 130
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 39, 92
BtrI CACGTC 1 cut(s) 899
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 214, 363, 882
Cac8I GCNNGC 4 cut(s) 41, 499, 543, 765
CfoI GCGC 2 cut(s) 388, 763
Cfr13I GGNCC 1 cut(s) 91
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 846
CviAII CATG 7 cut(s) 83, 272, 551, 587, 788, 813, 917
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 6 cut(s) 122, 351, 369, 575, 885, 965
DpnI GATC 2 cut(s) 6, 362
DpnII GATC 2 cut(s) 4, 360
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EciI GGCGGA 1 cut(s) 688
Ecl136II GAGCTC 1 cut(s) 696
Eco130I CCWWGG 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 698
Eco32I GATATC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 696
Eco57I CTGAAG 4 cut(s) 8, 336, 377, 531
EcoICRI GAGCTC 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 3 cut(s) 231, 525, 868
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 7 cut(s) 86, 275, 554, 590, 791, 816, 920
FatI CATG 7 cut(s) 82, 271, 550, 586, 787, 812, 916
Fnu4HI GCNGC 2 cut(s) 348, 684
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 348, 684
FspBI CTAG 3 cut(s) 546, 654, 863
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 2 cut(s) 387, 762
GluI GCNGC 2 cut(s) 348, 684
GsuI CTGGAG 1 cut(s) 548
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 2 cut(s) 39, 92
HhaI GCGC 2 cut(s) 388, 763
Hin1II CATG 7 cut(s) 86, 275, 554, 590, 791, 816, 920
Hin6I GCGC 2 cut(s) 386, 761
HinP1I GCGC 2 cut(s) 386, 761
HindIII AAGCTT 3 cut(s) 108, 495, 962
HinfI GANTC 5 cut(s) 19, 86, 96, 143, 770
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 882, 955
Hpy188I TCNGA 6 cut(s) 129, 302, 379, 578, 775, 799
Hpy8I GTNNAC 2 cut(s) 882, 955
HpyAV CCTTC 2 cut(s) 56, 936
HpyCH4III ACNGT 2 cut(s) 333, 691
HpyCH4IV ACGT 1 cut(s) 898
HpyCH4V TGCA 3 cut(s) 33, 720, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 551, 902
HpyF3I CTNAG 6 cut(s) 122, 351, 369, 575, 885, 965
HpySE526I ACGT 1 cut(s) 898
Hsp92II CATG 7 cut(s) 86, 275, 554, 590, 791, 816, 920
HspAI GCGC 2 cut(s) 386, 761
Kzo9I GATC 2 cut(s) 4, 360
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 48, 701
Lsp1109I GCAGC 2 cut(s) 334, 670
LweI GCATC 1 cut(s) 883
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 3 cut(s) 546, 654, 863
MaeII ACGT 1 cut(s) 898
MaeIII GTNAC 2 cut(s) 779, 821
MalI GATC 2 cut(s) 6, 362
MboI GATC 2 cut(s) 4, 360
MboII GAAGA 9 cut(s) 14, 90, 130, 157, 212, 329, 370, 445, 548
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 698
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 7 cut(s) 286, 320, 409, 793, 800, 921, 979
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 3 cut(s) 107, 201, 701
MnlI CCTC 9 cut(s) 9, 471, 474, 523, 526, 558, 594, 684, 880
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
MseI TTAA 3 cut(s) 408, 516, 971
MslI CAYNNNNRTG 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 2 cut(s) 347, 473
MspR9I CCNGG 3 cut(s) 233, 527, 870
MvaI CCWGG 3 cut(s) 233, 527, 870
MwoI GCNNNNNNNGC 3 cut(s) 116, 551, 902
NdeII GATC 2 cut(s) 4, 360
NlaIII CATG 7 cut(s) 86, 275, 554, 590, 791, 816, 920
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 387
NspI RCATGY 1 cut(s) 275
NspV TTCGAA 2 cut(s) 114, 141
PciI ACATGT 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 4 cut(s) 19, 86, 143, 770
PkrI GCNGC 2 cut(s) 349, 685
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PscI ACATGT 1 cut(s) 271
PsiI TTATAA 1 cut(s) 926
Psp124BI GAGCTC 1 cut(s) 698
Psp6I CCWGG 3 cut(s) 231, 525, 868
PspGI CCWGG 3 cut(s) 231, 525, 868
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 347, 473
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 408, 516, 971
SatI GCNGC 2 cut(s) 348, 684
Sau3AI GATC 2 cut(s) 4, 360
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 233, 527, 870
SduI GDGCHC 1 cut(s) 698
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 1 cut(s) 883
SfuI TTCGAA 2 cut(s) 114, 141
SmiMI CAYNNNNRTG 1 cut(s) 585
SpeI ACTAGT 1 cut(s) 862
Sse9I AATT 7 cut(s) 286, 320, 409, 793, 800, 921, 979
SsiI CCGC 1 cut(s) 699
SspMI CTAG 3 cut(s) 546, 654, 863
SstI GAGCTC 1 cut(s) 698
StyD4I CCNGG 3 cut(s) 231, 525, 868
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 2 cut(s) 333, 691
TaiI ACGT 1 cut(s) 901
TaqI TCGA 2 cut(s) 114, 141
TasI AATT 7 cut(s) 286, 320, 409, 793, 800, 921, 979
TfiI GAWTC 4 cut(s) 19, 86, 143, 770
Tru1I TTAA 3 cut(s) 408, 516, 971
Tru9I TTAA 3 cut(s) 408, 516, 971
TscAI CASTG 3 cut(s) 214, 370, 889
TseI GCWGC 2 cut(s) 347, 683
TspDTI ATGAA 3 cut(s) 83, 475, 603
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 3 cut(s) 214, 370, 889
XagI CCTNNNNNAGG 1 cut(s) 530
XapI RAATTY 2 cut(s) 286, 793
XceI RCATGY 1 cut(s) 275
XspI CTAG 3 cut(s) 546, 654, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.