Rorug04G0257000

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003703
Physical Location & Seq
Forward (+)
42947392 .. 42949604
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0257000.1

Sequence Viewer

Length: 1197 bp
ATGGAGAACAATGTGTTTGAGAATGCTTCGGTGGTGATAGTAGGCGCCGGCCCGTCAGGCATTGCAACCTCAGCGCTGCTCAACTCCATGTTGGTGCCAAACCTCGTCTTCGAGAGGGAAGACTGTTGTGCTTCCCTCTGGAAGAAACGGTCCTACGACCGTTTGAGTCTTCATTTGGCGAAAAACTTTTGCTCTCTGCCTCTCATGCCGCACCCATTCAGCACTGCAACTTTCATGTCCAAAGACACGTTCATAAGCTATATGGACGAGTACGTTTCCCGTTTCAACGTCAACCCCCATTACTGTCACAATGTTGAGTCGGCTTTTTACGAAGAAGCTGATAAAAAATGGAAGGTTGAAGTGAAGAACACTAGGGTGACTGATAAGGAGGTTTGCCCCCAAGTGTACTATGCGGATTTCTTAGTGGTGGCCACCGGAGAAAATAGCCAGGCAATTATCCCAGAGTTGCCTGGACTGGAGACCTTTAATGGAAAGGTTATTCATGCGAGTGATTATAAATGTGGAGCGAGTTTTAAAGATAAGAGTGTGTTGGTCATTGGTTGTGGCAATTCTGGCATGGAGATTAGTAATGATCTCTCAGAAAATGGAGCTCATGCATCCATTGTTGTTAGAAGCCAACTTCATGTACTTAGCAGAGAAATTGTACGAATTGGGATGATACTGTTGAATTTCGTCCCGGTGAATATGGTAGACAGGTTCGTTTCATTTCTTGCCATGTTTAGCTACAGTGATCTGCCCAGCTATGGGATTCATCAACCAGCTGAAGGCCCTTTTTTCTACAAAACACTTACTGGAAAGACTCCGGTAATCGATCGTGGAACTATCAAGAAAATTCGCTCCCAAAAGATTAAGGTTTTCCCAGGAATAGAGAAGATACACAACAATATTGTGGAATTCAAAAATGGTGCCCTCCAGCGTTTCGATGCCATTGTGTTGGCAACTGGTTATCGAAGCGTTGCGCACAACTGGCTCAAGGATTATAAGTTCATTTTTAATGAGGATGACAAGCCTAAGAACAAGTATCCAAACCACTGGAAAGGAGAAAAGGGCGTCTACTCTGTTGGATTCACAGGGAGGGGAATTCAAGGGATTTCGTCGGATTCTAAGGCTGTTGCTGAAGATATCTATCAGCTTGTAATGGCACAGAAACCCACTTATGCTGCAAGAATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

398

Amino Acids

44.62

Weight (kDa)

8.49

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 10 - 331 4e-22 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 10 - 212 1.8e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 12 - 213 1.5e-17 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 75 - 210 1.9e-11 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 516, 1002
Acc16I TGCGCA 1 cut(s) 981
AccB1I GGYRCC 3 cut(s) 44, 94, 926
AccI GTMKAC 2 cut(s) 711, 1074
AciI CCGC 2 cut(s) 209, 413
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 4 cut(s) 688, 852, 914, 1101
AcuI CTGAAG 2 cut(s) 804, 1158
AcyI GRCGYC 2 cut(s) 45, 1071
AfaI GTAC 4 cut(s) 272, 407, 648, 666
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 764, 765, 785
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 286, 359, 688, 919, 1106
AjnI CCWGG 3 cut(s) 447, 469, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AleI CACNNNNGTG 1 cut(s) 374
AloI GAACNNNNNNTCC 2 cut(s) 989, 1021
AluBI AGCT 7 cut(s) 258, 338, 611, 744, 762, 782, 1153
AluI AGCT 7 cut(s) 258, 338, 611, 744, 762, 782, 1153
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 473
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 3 cut(s) 49, 429, 787
ApeKI GCWGC 2 cut(s) 76, 1181
ApoI RAATTY 4 cut(s) 688, 852, 914, 1101
AspLEI GCGC 3 cut(s) 47, 76, 982
AspS9I GGNCC 3 cut(s) 50, 150, 788
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 3 cut(s) 46, 388, 712
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 931
BalI TGGCCA 1 cut(s) 431
BanI GGYRCC 3 cut(s) 44, 94, 926
BanII GRGCYC 1 cut(s) 613
BbsI GAAGAC 3 cut(s) 100, 126, 161
Bbv12I GWGCWC 1 cut(s) 613
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 63, 1168
BciT130I CCWGG 3 cut(s) 449, 471, 882
BciVI GTATCC 1 cut(s) 1053
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 745
BfoI RGCGCY 2 cut(s) 48, 77
BfuI GTATCC 1 cut(s) 1053
BglI GCCNNNNNGGC 1 cut(s) 57
BisI GCNGC 3 cut(s) 77, 209, 1182
BlsI GCNGC 3 cut(s) 78, 210, 1183
Bme1390I CCNGG 4 cut(s) 449, 471, 698, 882
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 50, 150, 788
BmiI GGNNCC 3 cut(s) 46, 96, 928
BmrFI CCNGG 4 cut(s) 449, 471, 698, 882
BmsI GCATC 2 cut(s) 626, 934
BpiI GAAGAC 3 cut(s) 100, 126, 161
BpmI CTGGAG 2 cut(s) 497, 917
Bpu10I CCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 1 cut(s) 698
Bsa29I ATCGAT 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 1146
BsaHI GRCGYC 2 cut(s) 45, 1071
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 880
BsaWI WCCGGW 2 cut(s) 434, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 764, 765, 785
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 5 cut(s) 480, 817, 967, 992, 1058
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 3 cut(s) 449, 471, 882
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 1 cut(s) 880
BseGI GGATG 3 cut(s) 617, 681, 1027
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 3 cut(s) 764, 765, 785
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 84, 612
BseNI ACTGG 5 cut(s) 480, 817, 967, 992, 1058
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 2 cut(s) 63, 1168
BseYI CCCAGC 1 cut(s) 758
Bsh1285I CGRYCG 2 cut(s) 160, 835
BshFI GGCC 3 cut(s) 51, 431, 789
BshNI GGYRCC 3 cut(s) 44, 94, 926
BshVI ATCGAT 1 cut(s) 831
BsiEI CGRYCG 2 cut(s) 160, 835
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 4 cut(s) 48, 435, 698, 824
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 3 cut(s) 764, 765, 785
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 3 cut(s) 51, 431, 789
Bso31I GGTCTC 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 613, 931
Bsp143I GATC 3 cut(s) 592, 751, 832
BspACI CCGC 2 cut(s) 209, 413
BspANI GGCC 3 cut(s) 51, 431, 789
BspCNI CTCAG 2 cut(s) 83, 611
BspDI ATCGAT 1 cut(s) 831
BspLI GGNNCC 3 cut(s) 46, 96, 928
BspT107I GGYRCC 3 cut(s) 44, 94, 926
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 5 cut(s) 480, 817, 967, 992, 1058
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 880
BssMI GATC 3 cut(s) 592, 751, 832
BssNI GRCGYC 2 cut(s) 45, 1071
Bst2UI CCWGG 3 cut(s) 449, 471, 882
Bst4CI ACNGT 6 cut(s) 125, 150, 161, 305, 684, 749
BstACI GRCGYC 2 cut(s) 45, 1071
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 6 cut(s) 70, 421, 598, 650, 1032, 1125
BstF5I GGATG 3 cut(s) 617, 681, 1027
BstH2I RGCGCY 2 cut(s) 48, 77
BstHHI GCGC 3 cut(s) 47, 76, 982
BstKTI GATC 3 cut(s) 595, 754, 835
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 592, 751, 832
BstMCI CGRYCG 2 cut(s) 160, 835
BstMWI GCNNNNNNNGC 5 cut(s) 57, 71, 205, 573, 988
BstNI CCWGG 3 cut(s) 449, 471, 882
BstSCI CCNGG 4 cut(s) 447, 469, 696, 880
BstSFI CTRYAG 1 cut(s) 745
BstSLI GKGCMC 1 cut(s) 931
BstV1I GCAGC 2 cut(s) 63, 1168
BstV2I GAAGAC 3 cut(s) 100, 126, 161
BstXI CCANNNNNNTGG 2 cut(s) 955, 1053
Bsu15I ATCGAT 1 cut(s) 831
BsuI GTATCC 1 cut(s) 1053
BsuRI GGCC 3 cut(s) 51, 431, 789
BsuTUI ATCGAT 1 cut(s) 831
BtsCI GGATG 3 cut(s) 617, 681, 1027
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 222, 754, 1051
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 3 cut(s) 47, 76, 982
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 3 cut(s) 50, 150, 788
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 1 cut(s) 1060
Csp6I GTAC 4 cut(s) 271, 406, 647, 665
CviAII CATG 8 cut(s) 88, 205, 235, 503, 577, 614, 644, 736
CviQI GTAC 4 cut(s) 271, 406, 647, 665
DdeI CTNAG 6 cut(s) 70, 421, 598, 650, 1032, 1125
DinI GGCGCC 1 cut(s) 46
DpnI GATC 3 cut(s) 594, 753, 834
DpnII GATC 3 cut(s) 592, 751, 832
DraI TTTAAA 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 473
Eco32I GATATC 1 cut(s) 1144
Eco47I GGWCC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 611
Eco57I CTGAAG 2 cut(s) 804, 1158
EcoICRI GAGCTC 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 788
EcoRI GAATTC 2 cut(s) 914, 1101
EcoRII CCWGG 3 cut(s) 447, 469, 880
EcoRV GATATC 1 cut(s) 1144
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 613
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaeI CATG 8 cut(s) 91, 208, 238, 506, 580, 617, 647, 739
FaqI GGGAC 1 cut(s) 680
FatI CATG 8 cut(s) 87, 204, 234, 502, 576, 613, 643, 735
FblI GTMKAC 2 cut(s) 711, 1074
Fnu4HI GCNGC 3 cut(s) 77, 209, 1182
FokI GGATG 3 cut(s) 604, 688, 1034
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 3 cut(s) 77, 209, 1182
FspBI CTAG 1 cut(s) 372
FspI TGCGCA 1 cut(s) 981
GlaI GCGC 3 cut(s) 46, 75, 981
GluI GCNGC 3 cut(s) 77, 209, 1182
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 2 cut(s) 497, 917
HaeII RGCGCY 2 cut(s) 48, 77
HaeIII GGCC 3 cut(s) 51, 431, 789
HapII CCGG 4 cut(s) 48, 435, 698, 824
HgaI GACGC 1 cut(s) 1060
HhaI GCGC 3 cut(s) 47, 76, 982
Hin1I GRCGYC 2 cut(s) 45, 1071
Hin1II CATG 8 cut(s) 91, 208, 238, 506, 580, 617, 647, 739
Hin6I GCGC 3 cut(s) 45, 74, 980
HinP1I GCGC 3 cut(s) 45, 74, 980
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 6 cut(s) 166, 317, 769, 820, 1086, 1121
HpaII CCGG 4 cut(s) 48, 435, 698, 824
HphI GGTGA 3 cut(s) 46, 388, 712
Hpy166II GTNNAC 4 cut(s) 292, 406, 712, 1075
Hpy188I TCNGA 2 cut(s) 601, 1120
Hpy188III TCNNGA 3 cut(s) 112, 139, 847
Hpy8I GTNNAC 4 cut(s) 292, 406, 712, 1075
Hpy99I CGWCG 1 cut(s) 1120
HpyAV CCTTC 2 cut(s) 346, 779
HpyCH4III ACNGT 6 cut(s) 125, 150, 161, 305, 684, 749
HpyCH4IV ACGT 3 cut(s) 248, 273, 288
HpyCH4V TGCA 4 cut(s) 65, 227, 617, 1184
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 71, 205, 573, 988
HpyF3I CTNAG 6 cut(s) 70, 421, 598, 650, 1032, 1125
HpySE526I ACGT 3 cut(s) 248, 273, 288
Hsp92I GRCGYC 2 cut(s) 45, 1071
Hsp92II CATG 8 cut(s) 91, 208, 238, 506, 580, 617, 647, 739
HspAI GCGC 3 cut(s) 45, 74, 980
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 592, 751, 832
LmnI GCTCC 3 cut(s) 524, 608, 863
Lsp1109I GCAGC 2 cut(s) 63, 1168
LweI GCATC 2 cut(s) 626, 934
MaeI CTAG 1 cut(s) 372
MaeII ACGT 3 cut(s) 248, 273, 288
MaeIII GTNAC 2 cut(s) 305, 376
MalI GATC 3 cut(s) 594, 753, 834
MboI GATC 3 cut(s) 592, 751, 832
MboII GAAGA 8 cut(s) 100, 131, 154, 161, 344, 376, 904, 1151
MhlI GDGCHC 2 cut(s) 613, 931
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 8 cut(s) 453, 568, 660, 669, 688, 852, 914, 1101
MluNI TGGCCA 1 cut(s) 431
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 3 cut(s) 175, 326, 814
MmeI TCCRAC 2 cut(s) 1063, 1098
MnlI CCTC 9 cut(s) 79, 108, 113, 146, 210, 382, 941, 1012, 1089
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 431
MseI TTAA 4 cut(s) 486, 534, 870, 1014
MslI CAYNNNNRTG 3 cut(s) 92, 374, 507
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 4 cut(s) 48, 435, 698, 824
MspR9I CCNGG 4 cut(s) 449, 471, 698, 882
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 3 cut(s) 449, 471, 882
MwoI GCNNNNNNNGC 5 cut(s) 57, 71, 205, 573, 988
NaeI GCCGGC 1 cut(s) 49
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 698
NdeII GATC 3 cut(s) 592, 751, 832
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 8 cut(s) 91, 208, 238, 506, 580, 617, 647, 739
NlaIV GGNNCC 3 cut(s) 46, 96, 928
NmuCI GTSAC 2 cut(s) 305, 376
NsbI TGCGCA 1 cut(s) 981
NsiI ATGCAT 1 cut(s) 619
OliI CACNNNNGTG 1 cut(s) 374
PctI GAATGC 1 cut(s) 28
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 3 cut(s) 769, 1086, 1121
PkrI GCNGC 3 cut(s) 78, 210, 1183
Ple19I CGATCG 1 cut(s) 835
PleI GAGTC 3 cut(s) 174, 325, 814
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 3 cut(s) 174, 325, 814
PsiI TTATAA 2 cut(s) 516, 1002
Psp124BI GAGCTC 1 cut(s) 613
Psp6I CCWGG 3 cut(s) 447, 469, 880
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 3 cut(s) 447, 469, 880
PspN4I GGNNCC 3 cut(s) 46, 96, 928
PspPI GGNCC 3 cut(s) 50, 150, 788
PvuI CGATCG 1 cut(s) 835
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 4 cut(s) 272, 407, 648, 666
RsaNI GTAC 4 cut(s) 271, 406, 647, 665
RseI CAYNNNNRTG 3 cut(s) 92, 374, 507
SacI GAGCTC 1 cut(s) 613
SaqAI TTAA 4 cut(s) 486, 534, 870, 1014
SatI GCNGC 3 cut(s) 77, 209, 1182
Sau3AI GATC 3 cut(s) 592, 751, 832
Sau96I GGNCC 3 cut(s) 50, 150, 788
SchI GAGTC 3 cut(s) 175, 326, 814
ScrFI CCNGG 4 cut(s) 449, 471, 698, 882
SduI GDGCHC 2 cut(s) 613, 931
SfaNI GCATC 2 cut(s) 626, 934
SfcI CTRYAG 1 cut(s) 745
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 3 cut(s) 92, 374, 507
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
Sse9I AATT 8 cut(s) 453, 568, 660, 669, 688, 852, 914, 1101
SsiI CCGC 2 cut(s) 209, 413
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 1 cut(s) 907
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 613
StyD4I CCNGG 4 cut(s) 447, 469, 696, 880
TaaI ACNGT 6 cut(s) 125, 150, 161, 305, 684, 749
TaiI ACGT 3 cut(s) 251, 276, 291
TaqI TCGA 4 cut(s) 111, 831, 942, 970
TasI AATT 8 cut(s) 453, 568, 660, 669, 688, 852, 914, 1101
TatI WGTACW 2 cut(s) 405, 646
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 769, 1086, 1121
Tru1I TTAA 4 cut(s) 486, 534, 870, 1014
Tru9I TTAA 4 cut(s) 486, 534, 870, 1014
TscAI CASTG 3 cut(s) 229, 754, 1058
TseFI GTSAC 2 cut(s) 305, 376
TseI GCWGC 2 cut(s) 76, 1181
Tsp45I GTSAC 2 cut(s) 305, 376
TspDTI ATGAA 8 cut(s) 161, 223, 241, 491, 632, 714, 761, 997
TspRI CASTG 3 cut(s) 229, 754, 1058
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 4 cut(s) 688, 852, 914, 1101
XmiI GTMKAC 2 cut(s) 711, 1074
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.