Rorug05G0516900

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003703
Physical Location & Seq
Forward (+)
70153878 .. 70154213
336 bp
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UTR
Exon/CDS
Intron
Rorug05G0516900.1

Sequence Viewer

Length: 336 bp
ATGGAATCTACCGGAGAACAACCAAACAGCATCTGCCATGTTGTGGCCCTGCCGTACCCCGGTCAGGGTCACATAAACCCAATGCTGAATCTCTGCAAGTTACTAGCTTCACAAAAGAGCGATATCCTCATCACCTTTGTCATCACAGAAGAGTGGCTCAGCTTCATTGGCTCTGAAGCCAAGGTGGACAACATTCGCTTTGCAACAATCCCCAATGTTATCCTATCGGAGAAGGCCGTGCCGACAACATGGATGCCTTCTTTGAAACCATCATTGCCTAAATGGAAACCCCATTTGAGCAACTCCTGGATCAGCTCGAGTCACCCCCTACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

6.89

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 105 4.1e-08 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 43
AclWI GGATC 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 4 cut(s) 43, 59, 64, 65
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 3 cut(s) 107, 162, 315
AluI AGCT 3 cut(s) 107, 162, 315
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 2 cut(s) 45, 234
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 124, 314
AvaI CYCGRG 1 cut(s) 316
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 37, 221
BciT130I CCWGG 1 cut(s) 307
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 60, 307
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 60, 307
BmsI GCATC 2 cut(s) 39, 243
Bpu1102I GCTNAGC 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 58, 180
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 59, 64, 65
Bse3DI GCAATG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 58, 180
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 4 cut(s) 43, 59, 64, 65
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 172
BshFI GGCC 2 cut(s) 47, 236
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 2 cut(s) 12, 60
BslI CCNNNNNNNGG 4 cut(s) 43, 59, 64, 65
BsnI GGCC 2 cut(s) 47, 236
BsoBI CYCGRG 1 cut(s) 316
Bsp143I GATC 1 cut(s) 309
Bsp1720I GCTNAGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 47, 236
BspCNI CTCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 58, 180
BssMI GATC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 58, 305
BsuRI GGCC 2 cut(s) 47, 236
BtsCI GGATG 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 55
CviAII CATG 2 cut(s) 38, 249
CviJI RGCY 8 cut(s) 47, 107, 157, 162, 171, 179, 236, 315
CviKI_1 RGCY 8 cut(s) 47, 107, 157, 162, 171, 179, 236, 315
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 158
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 180
Eco32I GATATC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 305
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 41, 252
FaiI YATR 3 cut(s) 39, 74, 250
FatI CATG 2 cut(s) 37, 248
FokI GGATG 1 cut(s) 265
FspBI CTAG 1 cut(s) 104
HaeIII GGCC 2 cut(s) 47, 236
HapII CCGG 2 cut(s) 12, 60
Hin1II CATG 2 cut(s) 41, 252
HinfI GANTC 3 cut(s) 5, 88, 319
HpaII CCGG 2 cut(s) 12, 60
HphI GGTGA 2 cut(s) 124, 314
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 175, 229
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 226, 267
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 96, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 2 cut(s) 41, 252
Kzo9I GATC 1 cut(s) 309
LpnPI CCDG 6 cut(s) 25, 50, 62, 73, 292, 319
LweI GCATC 2 cut(s) 39, 243
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 3 cut(s) 68, 99, 320
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 1 cut(s) 137
MspI CCGG 2 cut(s) 12, 60
MspR9I CCNGG 2 cut(s) 60, 307
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 60
NdeII GATC 1 cut(s) 309
NlaIII CATG 2 cut(s) 41, 252
NmuCI GTSAC 2 cut(s) 68, 320
PaeR7I CTCGAG 1 cut(s) 316
PfeI GAWTC 2 cut(s) 5, 88
PflMI CCANNNNNTGG 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 305
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspPI GGNCC 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 60, 307
SetI ASST 5 cut(s) 109, 137, 164, 186, 317
SfaNI GCATC 2 cut(s) 39, 243
Sfr274I CTCGAG 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 58, 305
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 317
TfiI GAWTC 2 cut(s) 5, 88
TseFI GTSAC 2 cut(s) 68, 320
Tsp45I GTSAC 2 cut(s) 68, 320
TspDTI ATGAA 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 316
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.